ISNia2

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MEEM01000039 ND Niabella sp.
Niabella sp. SCN 42-15
DNA section
IS Length : 1002 bp

Ends


IR Length : 23/27

IRL : AATGACTGTCCGGGATTTGGTTTTTACTAAATAAAGTAGTATTTTTAAGC
IRR : AATGACTATCCGCGACTTGGTTTATACCATGGTTGTGATAATGTTGCAAT

Insertion site


Left flankDirect repeatRight flankDR Length
CAAGGGAAGGATTTTCAAAAACTTAACG0

DNA sequence

AATGACTGTCCGGGATTTGGTTTTTACTAAATAAAGTAGTATTTTTAAGCTAAAATTATTAGCTATGTATATTGTAACCTTTTTTAAGTGCTACCCTGAT
GAGCGAAGCTGTAAGGAGTTCTTTAAGCAACAAAGGTCTGAGGCGCATAGTTGCTGTAATCGGTGCGGTTCTTTACAGTTAAGATGGGAAGACAAAGCAA
GCCGCTGGCGTTGTAAAGAGTGCAAACAAACGATGAGTTTAAAACAAGGTACGGTAATGGAAAATTCTAATCTTGGTTTTAAAGTATGGTTATGGGGTTT
GTTTTTAATGAGTCTTACCAAAAAGGGATTCTCTGCATTGGAAATGCAACGCCTATTGGGACATAAGCGCTATGAGCCTATTTGGCTAATGATGCATAAA
ATTCGCCTATCTATGGGTCAAAGAGACGAAAAATATACATTGGATGGGTATATCGAAATGGATGAAGGCTTTTTTGAAGGGCACAGAAAACACAATCAGG
ACGGCAGCCCTGCTAAAGAGTTAGACAGGCAGGTAAAGGCTGTAGCAGCCGTAAGCCGCCAACCAGTGCCTGCCGATAAACAACAAAAACACCGGTCCCA
CACAAAAGCCCGGTATGTGAAAATGAATCTGGTAGAACGTTTGGCCAATAAGGATGTAAGATATGAATCGCAAAAGATGATAGCTGGTGAGGCAACCGTA
CTCACAGACGGTAAGCCTTGCTATAATACACTTAAAGCTATTTGTGTTAAACATCAAAAAATGGTTGTTACCGATAAAAAAGAAGTATCAAAATTATTCC
CATGGGTACACATAGCAATTTCTAATGTAAAAAAGAAAATACTGGGTCTTCACCACCAAATAAAAGATGTATATATGCAAAACTACCTCAACGAATTTTG
CTACAAGTTCAACCGCAGATTCTTCGGACAGGCTTTATTTGACAGGCTCATTATTGCAACATTATCACAACCATGGTATAAACCAAGTCGCGGATAGTCA
TT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa65997+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYIVTFFKCYPDERSCKEFFKQQRSEAHSCCNRCGSLQLRWEDKASRWRCKECKQTMSLKQGTVMENSNLGFKVWLWGLFLMSLTKKGFSALEMQRLLGH
KRYEPIWLMMHKIRLSMGQRDEKYTLDGYIEMDEGFFEGHRKHNQDGSPAKELDRQVKAVAAVSRQPVPADKQQKHRSHTKARYVKMNLVERLANKDVRY
ESQKMIAGEATVLTDGKPCYNTLKAICVKHQKMVVTDKKEVSKLFPWVHIAISNVKKKILGLHHQIKDVYMQNYLNEFCYKFNRRFFGQALFDRLIIATL
SQPWYKPSRG

 

Blast result :
Comments
ISNia2 is 61% aa similar to ISPba2.
References
1] ISfinder annotation (2017)
2] Kantor,R.S., van Zyl,A.W., van Hille,R.P., Thomas,B.C., Harrison,S.T. and Banfield,J.F. (2015) Environ. Microbiol. 17 (12), 4929-4941.