ISAcba1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MKSW01000042 | ND | Actinobacteria bacterium | Actinobacteria bacterium 69-20 |
DNA section
IS Length : 3517 bp
Ends
IR Length : 24/27
IRL : ATTGGGTATCCGCTTGAGTCCAGTAGGTTTGAGTGGTGATCGAGCGGCTG
IRR : AGTGGGTATCTGCTTGAGTCCAGTCGGCCGATCTTCGACGGAACTACCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGCACTCGT | ACAGTTGT | TCGATGGTCT | 8 |
DNA sequence
ATTGGGTATCCGCTTGAGTCCAGTAGGTTTGAGTGGTGATCGAGCGGCTGCCGGTGGCCGGCGTGGATTACCCGCGCACGCATCAGCAGCTGTCCGCGTG
GTTCTCGGACGAGGACGCGTGCCTGGAGTACCTGGCCCGCTTGCGCTGGCCAGACGGATTCCGCTGCCCCTCGTGCGGTGGGGATGCCGCCTGGCGCACC
GCGCGGCGCGCGTTGTGGATGTGCGCAGGGTGCGGGCGGCAGACGTCGGTCACGGCCGGCACGATCTTCCACCGCTCGCACACCCCGTTGACGACGTGGT
TCGCGGCGATCTGGTTCGTGTGCGCGTCGAAGAACGGGGTCTCGGCGAGCACGTTGCAGCAGGTCCTCGGGTTCGGCTCGTACGAGACCGCGTGGGCGTG
GCTGCACAAGCTACGCCGGGTCATGGTTCGCCCCGATCGTGACCTGCTCGGCGGGGTCGTCGAGCTGGACGAGACCCTCGTCGGCGGGCGCGCCAAGCCC
GCCTCCAGCGTGGTGATCACCAAGGTCCCGGTCATGGTCGCGGTCGAGACCCCGGCCGGGCACCAGCTCGGACGCATTCGCCTGGCCCGCGCCGACGCCC
GTAACTCGGGCCAGCTGATCGACTTCGCCCACCAGGTCATCGCCCCTGGCACGTTGATTCGCACCGACGGTGCCCGCAACCTGCGCCGGCTCGCCGAGCA
GGGCTACACCCACGAGTACAAGGTCATGCTGACCTCACCGGACCCGGCCCATGAGTACCTGCCTGGCGTGCACCTGGTCGCTTCCCTGCTCAAACGCTGG
GTCGCCGGCACGCTGCACCACGGCATCTCCCGCCGCCAGCTCGACTACTACCTCGACGAGTTCACCTTCCGGTTCAACCGGCGCAGCTCACGCTCCCGCG
GCCTGCTGTTCTACCGGCTCCTGCAACAAGCCGTCGCCACCGACCCGCACCCATTGGCCGCACTGGTCGGCGGCACCGACCAAGACCGAGGTGGCGGCGC
GTCGTAGCAGCGTCTATCGGGCCATGGCCCGCTGTGGACTCTGCACGCTGGTCACGGTGCTTGTGGTGTGCAGGTTCGTGGCCCGTCCGGCGCGCACGCC
GTTGGCGATGACGACGACCTCGGCCAGCTCATGGACCAGGACGACCGCGGCCAGCCCAAGCACTCCGGCGACTGCCAGCGGGATCAGGATCGCGATCAGG
GTGAGCGACAGGCCGACGTTCTGCAGCATGATGCGCCGGGCCCGTCGGGCGTGGGCGAATGCCTGAGGCAGGGCGCGCAGGTCCGTGCCCATCAGGGCGA
CGTCCGCGGTCTCCAGTGCGACGTCCGAGCCCATGGCGCCCATCGCGATGCCGAGGTCGGCGGTGGCCAGGGCGGGGGCGTCGTTGACGCCGTCGCCGAC
CATTGCTGTGGGTGCCTTCGTACGCAGGGCGGCGACCAGCGTGGACTTGTCCTCTGGACGCAGCTCGGCGTGGACGTCGGCGATGCCGGCCTGGGCGGCC
ACGGCGTAAGCGGTGGCGGTGTTGTCGCCGGTAAGCATGGTGACGTTGTAGTCGTGGCGGTGCAGCTCGGCGACGACCGCGCGCGCTTCGGGTCGCAGCT
CGTCTCGGACGGCGATCGCGCCGGTCACCGTCCCGTCGTCCTCGACCAGGACGGCCGTCGCCCCGGCTTCCTGCATTCCCTGGACCTGGGCGGCCAGGTC
CGCGGCGGTGATCCACCCGGGGCGGCCCAGCCGCACGGCCCGCCCGTCGACGGTGCCGGTCAGGCCGGCGCCGGGGACCGCCTGGACATCAGCGGCGTCG
GCCACGGTGTCGACCGCGGTGAGGATCGCCCGGGCCAACGGGTGCTCGCTGCGGGCCTCCAAGGCGCCCGCCACGGCGAGGACCTGCTCGCGGGTGTGGC
CCGCGGTGGTGGCGACGGCGACGACGGTGGGGGCGTTGGCTGTCAGGGTGCCGGTCTTGTCCAGGGCGATCATGCGGATCGCGCCGAGCGCCTCCAGGGC
GGCGCCACCCTTGATCAGCACGCCGAATCGGCTGGCGGCCCCAATGGCGGAGACGACCGAGACCGGCACGGAGATGGCCAACGCGCACGGGGACGCGGCT
ACCAGCACGACCAGCGCCCGTTGGATCCATAGTCCCGGGTCCCCGAGCAGGGAGCCGATCACTGCGATGAGGGTGGCGACGATCATGATGGCGGGCACGA
GCGGCTTGGCGACCCGGTCGGCGAGCCGCTGGGTGGTGCCCTTGCGCGACTGCTCGGCCTCGACGATGTGCACGATGCGGGCCAGGGAGTTGTCTTCCGA
AGTAGTGGTGACCTCGACCTCGAGGGCTCCGGTGCCGTTGATGGATCCCGCGTACACCTGGGTGCCGGGTCCGACCTCGACGGGGATCGATTCTCCGGTG
ATGGCCGAGACGTCGAGGGTGGTGCGGCCGGTGCGGATGGTGCCGTCGGTGGCGAGCCGTTCCCCCGGCTTGACGAGCATCGTGTCGCCCACAGCGAGAT
CGTCCGGGTCGATGACCTGCTCGATTCCCGCGCGTCGGACCGTGGCCGTGTCGGGGACCAGGGAGAGGAGGGCCCTCAGCCCACCGCGGGTCTTGGCCAG
GGAGTACTCCTCCAGGCCCTCGCTCAGGGAGTACAAGAACGCGAGGGTGGCGGCCTCGGCGAACTCACCGAGGATCACTGCGCCGACGGCGGCGATCGTC
ATCAAGGTGCCGACGCCGATCTTGCCCCGGGCCAGCTTCTGCAGGGTCTCGGGCACGAAGGTGCTCGCCCCGACCAGCAGGGCGGCGATGTTCAAGCCGA
GCGCCCAACCGTGCAGGCCGCCCAGTCCGAGCAGGAAGGCAACCAGCAGGAGCGTGCCCGCGACGAGACCGGCGCGGATCTCGCTGACACCCCAGATGCT
CGTGACGTCCTTATCGTCGTCATCGTCGATCTCATCGGCGGTGGTCTGATCGGCGCCGCGGTCGTCGGTCATCGGGTGCTCTCCTCGTGGGTTGATGTGT
TCGCGGGCATCGAGGTCTGGCTGCCCGTCCGGCCAAGTCCGTAAGTGGGGCACAGCTCGACCGCGTGCCCGGTCGCGTCCAGCAACAGCTCGGCCGCGGC
GAGGACCGCAAGCAGCTCCGGGGCCGTTGTCAGGAAGAACATCGACGCCCGACCCTGCGGGCGGGAGTCGACCAGGCCACAGTCCTTCAGGCACGCCAGG
TGTGCGCTCACCGTGCTCTGCGCCAGTCCGGTGTGCTCGGTGAGATCCCGCACTCGATGCTCACCGTGCGTCAGATGCTGCAGGACGGCCAGGCGCGTCG
GGTCGGAGAGCGAGTGGAACAGCGCCGCCGCCGGGGCCAGCACACCGCCCGCGGGATCGCCGGGTTCCCCGTCGACAACCCGATCCGGTCGTATCGCCAT
GTGACGATGATAGCGGCAGGTCTGGATGGGTCCTGCCTGGCTCGCGCGCCGCCGGAGCACAAGACACGAGGTAGTTCCGTCGAAGATCGGCCGACTGGAC
TCAAGCAGATACCCACT
GTTCTCGGACGAGGACGCGTGCCTGGAGTACCTGGCCCGCTTGCGCTGGCCAGACGGATTCCGCTGCCCCTCGTGCGGTGGGGATGCCGCCTGGCGCACC
GCGCGGCGCGCGTTGTGGATGTGCGCAGGGTGCGGGCGGCAGACGTCGGTCACGGCCGGCACGATCTTCCACCGCTCGCACACCCCGTTGACGACGTGGT
TCGCGGCGATCTGGTTCGTGTGCGCGTCGAAGAACGGGGTCTCGGCGAGCACGTTGCAGCAGGTCCTCGGGTTCGGCTCGTACGAGACCGCGTGGGCGTG
GCTGCACAAGCTACGCCGGGTCATGGTTCGCCCCGATCGTGACCTGCTCGGCGGGGTCGTCGAGCTGGACGAGACCCTCGTCGGCGGGCGCGCCAAGCCC
GCCTCCAGCGTGGTGATCACCAAGGTCCCGGTCATGGTCGCGGTCGAGACCCCGGCCGGGCACCAGCTCGGACGCATTCGCCTGGCCCGCGCCGACGCCC
GTAACTCGGGCCAGCTGATCGACTTCGCCCACCAGGTCATCGCCCCTGGCACGTTGATTCGCACCGACGGTGCCCGCAACCTGCGCCGGCTCGCCGAGCA
GGGCTACACCCACGAGTACAAGGTCATGCTGACCTCACCGGACCCGGCCCATGAGTACCTGCCTGGCGTGCACCTGGTCGCTTCCCTGCTCAAACGCTGG
GTCGCCGGCACGCTGCACCACGGCATCTCCCGCCGCCAGCTCGACTACTACCTCGACGAGTTCACCTTCCGGTTCAACCGGCGCAGCTCACGCTCCCGCG
GCCTGCTGTTCTACCGGCTCCTGCAACAAGCCGTCGCCACCGACCCGCACCCATTGGCCGCACTGGTCGGCGGCACCGACCAAGACCGAGGTGGCGGCGC
GTCGTAGCAGCGTCTATCGGGCCATGGCCCGCTGTGGACTCTGCACGCTGGTCACGGTGCTTGTGGTGTGCAGGTTCGTGGCCCGTCCGGCGCGCACGCC
GTTGGCGATGACGACGACCTCGGCCAGCTCATGGACCAGGACGACCGCGGCCAGCCCAAGCACTCCGGCGACTGCCAGCGGGATCAGGATCGCGATCAGG
GTGAGCGACAGGCCGACGTTCTGCAGCATGATGCGCCGGGCCCGTCGGGCGTGGGCGAATGCCTGAGGCAGGGCGCGCAGGTCCGTGCCCATCAGGGCGA
CGTCCGCGGTCTCCAGTGCGACGTCCGAGCCCATGGCGCCCATCGCGATGCCGAGGTCGGCGGTGGCCAGGGCGGGGGCGTCGTTGACGCCGTCGCCGAC
CATTGCTGTGGGTGCCTTCGTACGCAGGGCGGCGACCAGCGTGGACTTGTCCTCTGGACGCAGCTCGGCGTGGACGTCGGCGATGCCGGCCTGGGCGGCC
ACGGCGTAAGCGGTGGCGGTGTTGTCGCCGGTAAGCATGGTGACGTTGTAGTCGTGGCGGTGCAGCTCGGCGACGACCGCGCGCGCTTCGGGTCGCAGCT
CGTCTCGGACGGCGATCGCGCCGGTCACCGTCCCGTCGTCCTCGACCAGGACGGCCGTCGCCCCGGCTTCCTGCATTCCCTGGACCTGGGCGGCCAGGTC
CGCGGCGGTGATCCACCCGGGGCGGCCCAGCCGCACGGCCCGCCCGTCGACGGTGCCGGTCAGGCCGGCGCCGGGGACCGCCTGGACATCAGCGGCGTCG
GCCACGGTGTCGACCGCGGTGAGGATCGCCCGGGCCAACGGGTGCTCGCTGCGGGCCTCCAAGGCGCCCGCCACGGCGAGGACCTGCTCGCGGGTGTGGC
CCGCGGTGGTGGCGACGGCGACGACGGTGGGGGCGTTGGCTGTCAGGGTGCCGGTCTTGTCCAGGGCGATCATGCGGATCGCGCCGAGCGCCTCCAGGGC
GGCGCCACCCTTGATCAGCACGCCGAATCGGCTGGCGGCCCCAATGGCGGAGACGACCGAGACCGGCACGGAGATGGCCAACGCGCACGGGGACGCGGCT
ACCAGCACGACCAGCGCCCGTTGGATCCATAGTCCCGGGTCCCCGAGCAGGGAGCCGATCACTGCGATGAGGGTGGCGACGATCATGATGGCGGGCACGA
GCGGCTTGGCGACCCGGTCGGCGAGCCGCTGGGTGGTGCCCTTGCGCGACTGCTCGGCCTCGACGATGTGCACGATGCGGGCCAGGGAGTTGTCTTCCGA
AGTAGTGGTGACCTCGACCTCGAGGGCTCCGGTGCCGTTGATGGATCCCGCGTACACCTGGGTGCCGGGTCCGACCTCGACGGGGATCGATTCTCCGGTG
ATGGCCGAGACGTCGAGGGTGGTGCGGCCGGTGCGGATGGTGCCGTCGGTGGCGAGCCGTTCCCCCGGCTTGACGAGCATCGTGTCGCCCACAGCGAGAT
CGTCCGGGTCGATGACCTGCTCGATTCCCGCGCGTCGGACCGTGGCCGTGTCGGGGACCAGGGAGAGGAGGGCCCTCAGCCCACCGCGGGTCTTGGCCAG
GGAGTACTCCTCCAGGCCCTCGCTCAGGGAGTACAAGAACGCGAGGGTGGCGGCCTCGGCGAACTCACCGAGGATCACTGCGCCGACGGCGGCGATCGTC
ATCAAGGTGCCGACGCCGATCTTGCCCCGGGCCAGCTTCTGCAGGGTCTCGGGCACGAAGGTGCTCGCCCCGACCAGCAGGGCGGCGATGTTCAAGCCGA
GCGCCCAACCGTGCAGGCCGCCCAGTCCGAGCAGGAAGGCAACCAGCAGGAGCGTGCCCGCGACGAGACCGGCGCGGATCTCGCTGACACCCCAGATGCT
CGTGACGTCCTTATCGTCGTCATCGTCGATCTCATCGGCGGTGGTCTGATCGGCGCCGCGGTCGTCGGTCATCGGGTGCTCTCCTCGTGGGTTGATGTGT
TCGCGGGCATCGAGGTCTGGCTGCCCGTCCGGCCAAGTCCGTAAGTGGGGCACAGCTCGACCGCGTGCCCGGTCGCGTCCAGCAACAGCTCGGCCGCGGC
GAGGACCGCAAGCAGCTCCGGGGCCGTTGTCAGGAAGAACATCGACGCCCGACCCTGCGGGCGGGAGTCGACCAGGCCACAGTCCTTCAGGCACGCCAGG
TGTGCGCTCACCGTGCTCTGCGCCAGTCCGGTGTGCTCGGTGAGATCCCGCACTCGATGCTCACCGTGCGTCAGATGCTGCAGGACGGCCAGGCGCGTCG
GGTCGGAGAGCGAGTGGAACAGCGCCGCCGCCGGGGCCAGCACACCGCCCGCGGGATCGCCGGGTTCCCCGTCGACAACCCGATCCGGTCGTATCGCCAT
GTGACGATGATAGCGGCAGGTCTGGATGGGTCCTGCCTGGCTCGCGCGCCGCCGGAGCACAAGACACGAGGTAGTTCCGTCGAAGATCGGCCGACTGGAC
TCAAGCAGATACCCACT
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
960 bp | 319 aa | 48 | 1007 | + | No |
Chemistry : DDE
ORF sequence :
MPVAGVDYPRTHQQLSAWFSDEDACLEYLARLRWPDGFRCPSCGGDAAWRTARRALWMCAGCGRQTSVTAGTIFHRSHTPLTTWFAAIWFVCASKNGVSA
STLQQVLGFGSYETAWAWLHKLRRVMVRPDRDLLGGVVELDETLVGGRAKPASSVVITKVPVMVAVETPAGHQLGRIRLARADARNSGQLIDFAHQVIAP
GTLIRTDGARNLRRLAEQGYTHEYKVMLTSPDPAHEYLPGVHLVASLLKRWVAGTLHHGISRRQLDYYLDEFTFRFNRRSSRSRGLLFYRLLQQAVATDP
HPLAALVGGTDQDRGGGAS
STLQQVLGFGSYETAWAWLHKLRRVMVRPDRDLLGGVVELDETLVGGRAKPASSVVITKVPVMVAVETPAGHQLGRIRLARADARNSGQLIDFAHQVIAP
GTLIRTDGARNLRRLAEQGYTHEYKVMLTSPDPAHEYLPGVHLVASLLKRWVAGTLHHGISRRQLDYYLDEFTFRFNRRSSRSRGLLFYRLLQQAVATDP
HPLAALVGGTDQDRGGGAS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1959 bp | 652 aa | 2972 | 1014 | - | No |
Annotation : Cadmium-translocating P-type ATPaseDescription :
ORF sequence :
MTDDRGADQTTADEIDDDDDKDVTSIWGVSEIRAGLVAGTLLLVAFLLGLGGLHGWALGLNIAALLVGASTFVPETLQKLARGKIGVGTLMTIAAVGAVI
LGEFAEAATLAFLYSLSEGLEEYSLAKTRGGLRALLSLVPDTATVRRAGIEQVIDPDDLAVGDTMLVKPGERLATDGTIRTGRTTLDVSAITGESIPVEV
GPGTQVYAGSINGTGALEVEVTTTSEDNSLARIVHIVEAEQSRKGTTQRLADRVAKPLVPAIMIVATLIAVIGSLLGDPGLWIQRALVVLVAASPCALAI
SVPVSVVSAIGAASRFGVLIKGGAALEALGAIRMIALDKTGTLTANAPTVVAVATTAGHTREQVLAVAGALEARSEHPLARAILTAVDTVADAADVQAVP
GAGLTGTVDGRAVRLGRPGWITAADLAAQVQGMQEAGATAVLVEDDGTVTGAIAVRDELRPEARAVVAELHRHDYNVTMLTGDNTATAYAVAAQAGIADV
HAELRPEDKSTLVAALRTKAPTAMVGDGVNDAPALATADLGIAMGAMGSDVALETADVALMGTDLRALPQAFAHARRARRIMLQNVGLSLTLIAILIPLA
VAGVLGLAAVVLVHELAEVVVIANGVRAGRATNLHTTSTVTSVQSPQRAMAR
LGEFAEAATLAFLYSLSEGLEEYSLAKTRGGLRALLSLVPDTATVRRAGIEQVIDPDDLAVGDTMLVKPGERLATDGTIRTGRTTLDVSAITGESIPVEV
GPGTQVYAGSINGTGALEVEVTTTSEDNSLARIVHIVEAEQSRKGTTQRLADRVAKPLVPAIMIVATLIAVIGSLLGDPGLWIQRALVVLVAASPCALAI
SVPVSVVSAIGAASRFGVLIKGGAALEALGAIRMIALDKTGTLTANAPTVVAVATTAGHTREQVLAVAGALEARSEHPLARAILTAVDTVADAADVQAVP
GAGLTGTVDGRAVRLGRPGWITAADLAAQVQGMQEAGATAVLVEDDGTVTGAIAVRDELRPEARAVVAELHRHDYNVTMLTGDNTATAYAVAAQAGIADV
HAELRPEDKSTLVAALRTKAPTAMVGDGVNDAPALATADLGIAMGAMGSDVALETADVALMGTDLRALPQAFAHARRARRIMLQNVGLSLTLIAILIPLA
VAGVLGLAAVVLVHELAEVVVIANGVRAGRATNLHTTSTVTSVQSPQRAMAR
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
432 bp | 143 aa | 3400 | 2969 | - | No |
Annotation : Transcriptional regulatorDescription : Transcriptional Regulator factor
ORF sequence :
MAIRPDRVVDGEPGDPAGGVLAPAAALFHSLSDPTRLAVLQHLTHGEHRVRDLTEHTGLAQSTVSAHLACLKDCGLVDSRPQGRASMFFLTTAPELLAVL
AAAELLLDATGHAVELCPTYGLGRTGSQTSMPANTSTHEESTR
AAAELLLDATGHAVELCPTYGLGRTGSQTSMPANTSTHEESTR
Blast result :
Comments
ISAcba1 is 72% aa similar to ISMva1.
References
1] ISfinder annotation (2017)
2] Kantor,R.S., Huddy,R.J., Iyer,R., Thomas,B.C., Brown,C.T., Anantharaman,K., Tringe,S., Hettich,R.L., Harrison,S.T. and Banfield,J.F. (2016) Direct GenBank submission.
2] Kantor,R.S., Huddy,R.J., Iyer,R., Thomas,B.C., Brown,C.T., Anantharaman,K., Tringe,S., Hettich,R.L., Harrison,S.T. and Banfield,J.F. (2016) Direct GenBank submission.