ISHsal6

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halobacterium salinarum
Halobacterium salinarum DSM 3754
DNA section
IS Length : 979 bp

Ends


IR Length : 30/40

IRL : GGGTGTGTTTAGACGCCCGGAACCGGGTTGCTTAGCGACTCACGGACTAG
IRR : GGGCGTGTTTAGACGCTCACAATCGTGCGGTTTAGCGGCTGAGCGCGGCT

Insertion site


Left flankDirect repeatRight flankDR Length
GCTCAGCGATGAAATTGATCTTGACCTCGGCG8

DNA sequence

GGGTGTGTTTAGACGCCCGGAACCGGGTTGCTTAGCGACTCACGGACTAGTGTTGCCTTCCTAGTAGCTGTCGCTAAATGTCCAACTTACTAGGAAGTGA
AGCGGGTAGGTTCGGTTGTGCCAACGAAGCTAGCCCGCTTCACTAGTCGCGTTGTTTCGCTCGCTCAAAAAGCCGTCGTCGGAACCCCGAAACCCGCGTT
ACGACGCGGTGAAGACGGCTACGCGGACTGGGTGATCGTCTCGATTCACGGCCTCAAAACGTATCTTGATCTTCCGTACCGGCGGCTGCTGGACGTGCTG
TACGAGATGCCGCAAATCAGTCGAATTCTCGGCCTAGAACCGACTGAACTGCCCGATTATTCCACCGTCTGTTCGCGGATGCAGGAGCTGAAAATGTCGA
TCTGGCGGCGACTTTTGCAGCTGTCGGCGGAGCTCCACGATACCGGCGAGATTCAGGCGATCGACGCAACCGGATTCGATCGGCGCGGAGCGAGTCGTCG
TTACGCTAAACGGACGAATTACACGTTCAGCGCGGTCAAAACGACGGTTCTCGTTGACTGCGATACGAGTACAATTCTAGATATACACTGTTCGATGAAA
CGACCACACGATACGCAGATCGGCGAACAGGTGCTCACACGAAATCTTGACCGAATCGAAACGATCACCGCCGACAAAGGCTACGACTGGGACGAATTAC
GCGGAAATCTAAGGGAAGCGGGCGTGAGACCAGTGATCAAACATCGTGAATTTTCGTCGCTGGACGCCGCTCACAACGCCAGACTCGACGACGAAACCTA
CCACCGCAGATCCGTCGTCGAGTCAGTTATTCGCACGCTGAAACGCCGCTTCGGCGATACGCTGCGAGCGCGAACCTGGTTCGGGCAATTCCGTGAACTC
GCGCTCAAAGCTGCTGTCAAAAATATCGAAGCCGCGCTCAGCCGCTAAACCGCACGATTGTGAGCGTCTAAACACGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
831 bp276 aa118948+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPTKLARFTSRVVSLAQKAVVGTPKPALRRGEDGYADWVIVSIHGLKTYLDLPYRRLLDVLYEMPQISRILGLEPTELPDYSTVCSRMQELKMSIWRRLL
QLSAELHDTGEIQAIDATGFDRRGASRRYAKRTNYTFSAVKTTVLVDCDTSTILDIHCSMKRPHDTQIGEQVLTRNLDRIETITADKGYDWDELRGNLRE
AGVRPVIKHREFSSLDAAHNARLDDETYHRRSVVESVIRTLKRRFGDTLRARTWFGQFRELALKAAVKNIEAALSR

 

Blast result :
Comments
ISHsal6 is 79% aa similar to ISHtu1.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.