ISLdl3

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ316615 ND Lactobacillus delbrueckii
Lactobacillus delbrueckii subsp. lactis
DNA section
IS Length : 1208 bp

Ends


IR Length : 21/28

IRL : CCCCGATTTAAAATTGAAGTGCAACACTTGATAACTAGACCAATTAGACT
IRR : CCTCAATTGTCAAGTTAAGTGCAACACTAATGGCCTATTCTTATAATTGG

Insertion site


Left flankDirect repeatRight flankDR Length
ACATGACTATTTCATATTATTT0

DNA sequence

CCCCGATTTAAAATTGAAGTGCAACACTTGATAACTAGACCAATTAGACTAGCTTAAAAGGCCATGAAGGCCTATTCATATTATTAACGACAAAATCAAC
AGATAAGGATAGGTATCTTCATGACCCAAACTAAGAATATCATGCCTAAGCATTACCAACAACTCCAATCTTTTGAACGCAGTCAAATTGAGTGCCTGAC
TCGATTAGGATTTGGCGTTTGTCAGATCGCCAGCCGGCTTCACCGGAGTCCCAGCACCATTTCTCGCGAATTAAAACGCGGGTTAACCACCCAGATTGAT
TCCCAGAAACATCGGTCATATCAGGGCTACTTTGCCGAGCGCGGGGCGGCTTACTATCGAGAACAGCGGGCCAAGTGTCACCCCAAGGGTTTACTGCAGC
GGGCTGCCGTGTTCTTCAAGTCCCTGCCGAAAGCTTTAAAAGCTAAGCCACGAGTTTTCAGTGTCGATACGTATGTCCACTATTTCAAAGCTCATTACCC
GGGCTTTCCCTGCCCATCAACGGCTACGGTCTATCGGTATATCGAGGCTGGCAAGCTCCCGGAGCTTCACAGTTATGATTTACCCATGAAGTTACGTCGC
CGCGTTCAACGCCCGAATCACCGACATGCCCGCCTGAATAAAAAACGGCTTGGACAGTCCATTGAAGACCGGCCCGCAGTGGTTCGGAAACGTCAGGAGT
TGGGCCATTGGGAAGGCGACTTAGTGAAAGCCAAACGGGTTGAGTCCGAACCAGCTTTAATGACGTTAACCGAGCGAGTTAGCCGGATGGAAATTATCGT
TAAATTGCCTGATTACCGGGCAGAGACTTGCCGGCAAGCCCTCCAAGATACGATTGATGATTACGGTGCAGAAAACTTTCGGACGATCACGTTTGACAAC
GGCTCGGAATTCGCTAGTTTAAATCAGGTTCAAGGAACGGAAATCTACTTTGCCCATCCATATTCTCCCTGGGAACGGGGCACTAATGAGAATGTGAATG
GTCAATTAAGAGAGTTCTTCCCAAAGGGGCATTCCTTTAAAAACCTCTCATTAGTGGATCTGCAGTTGGTTCAAGACACGCTGAATCACCGTCCCCGCCG
CTGTATAAGCTATAGTTGTCCAGCGGATGTTATGCCACAACTGGTTTAACTTTCTAGACCAATTATAAGAATAGGCCATTAGTGTTGCACTTAACTTGAC
AATTGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa1211149+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTQTKNIMPKHYQQLQSFERSQIECLTRLGFGVCQIASRLHRSPSTISRELKRGLTTQIDSQKHRSYQGYFAERGAAYYREQRAKCHPKGLLQRAAVFFK
SLPKALKAKPRVFSVDTYVHYFKAHYPGFPCPSTATVYRYIEAGKLPELHSYDLPMKLRRRVQRPNHRHARLNKKRLGQSIEDRPAVVRKRQELGHWEGD
LVKAKRVESEPALMTLTERVSRMEIIVKLPDYRAETCRQALQDTIDDYGAENFRTITFDNGSEFASLNQVQGTEIYFAHPYSPWERGTNENVNGQLREFF
PKGHSFKNLSLVDLQLVQDTLNHRPRRCISYSCPADVMPQLV

 

Blast result :
Comments
ISLdl3 is 58% aa similar to ISStin2.
References
1] ISfinder submission (2018)
2] Ravin,V. and Alatossava,T. (2002) Microbiol. Res. 157 (2), 109-114 .
3] Ravin,V. and Alatossava,T. (2003) Plasmid 49 (3), 253-268.