ISKpn47

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP025966 ND Klebsiella pneumoniae
Klebsiella pneumoniae WCHKP34 pQnrB_LL34
DNA section
IS Length : 1317 bp

Ends


IR Length : 26/31

IRL : GGAGCCTGTACATAAATTTGTGTAATTGCCTGATTTTGATATGTTCAATT
IRR : GGAGCCTGTACACCATTCTGTGTAAATGCCTTTTCTCAGAAGTGACCGTC

Insertion site


Left flankDirect repeatRight flankDR Length
GAAATGCGGGCGGCGCGTCAGCGCGGCCAGG6

DNA sequence

GGAGCCTGTACATAAATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCACAGGCAGGTTACTTTATGGACGAAAAACAGTTGCAGGCTCTG
GCTAATGAACTGGCCAAAAATCTCAAAACTCCCGACGATCTCAGCCAGTTCGATCGCCTGCTGAAGAAAATCAGCGTTGAGGCGGCCCTCAATGCCGAGA
TGTCTCACCATCTGGGCTACGATAAAAATCAGCCTAAACCGGGCTCCAACACCCGCAATGGCTACTCAACAAAGACCGTAGCCACTGCGGATGGTCCACT
TGAACTGCGTACTCCCCGGGATCGCGAAGCCACCTTTGAACCCCAGTTGCTGAAGAAAAACCAGACCCGTATTACCGGGATGGATAACCAGATTTTATCC
CTGTACGCCAAAGGGATGACCACCCGCGAGATAGCGGCTGCGTTCAAAGAGATGTACGACGCGGATGTCTCGCCGGCGCTGGTCTCAAAAGTCACTGACG
CCGTCATGGAGCAGGTTGTTGAGTGGCAAAACCGGCCACTGGATGCCATCTATCCTATTGTTTACCTTGACTGTATTGTCCTTAAGGTCCGGCAGGACAG
TCGCGTCATCAATAAATCCGTGTTTCTGGCTCTGGGCATCAACATCGAAGGCCAGAAAGAACTGCTGGGTATGTGGCTGGCCGAAAATGAAGGCGCGAAG
TTCTGGCTGAATGTGCTGACAGAACTGAAGAATCGCGGCCTGAACGACATCCTCATCGCCTGCGTCGACGGACTGAAAGGCTTCCCGGACGCCATAAACG
CGGTATATCCGGAGGCCCGCATCCAGCTGTGCATCGTACATATGGTGCGCAACAGCCTGCGGTTCGTCTCCTGGAAAGATTACAAGGCCGTTACCCGCGA
TTTGAAGGCGATTTACCAGGCGCCGACGGAAGAAGCAGGTCTGCAGGCACTGGAAGTGTTCGCCAGCGCCTGGGACAGCCGCTATCCGCAGATAAGCCGG
AGCTGGACGGCAAACTGGTTAAACCTTGCGACGTTTTTCGGCTACCCGGCAGATATCCGCAAAGTCATCTACACCACCAACGCCATTGAATCACTGAACA
GCGTGATCAGGCATGCAATCAAAAAGCGCAAGGTGTTCCCGACGGACGAGTCAGTGAAAAAGGTCGTGTGGCTGGCAATCCAGGCCGCCTCACAAAAATG
GACGATGCCGCTGAGGGACTGGCGCATGGCAATGAGCCGTTTTATCATCGAGTTCGGTGACCGCCTCGACGGTCACTTCTGAGAAAAGGCATTTACACAG
AATGGTGTACAGGCTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa741282+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYDKNQPKPGSNTRNGYSTKTVATADGPLELRTPRDREATFEPQLLKKNQTRI
TGMDNQILSLYAKGMTTREIAAAFKEMYDADVSPALVSKVTDAVMEQVVEWQNRPLDAIYPIVYLDCIVLKVRQDSRVINKSVFLALGINIEGQKELLGM
WLAENEGAKFWLNVLTELKNRGLNDILIACVDGLKGFPDAINAVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEEAGLQALEVFASAW
DSRYPQISRSWTANWLNLATFFGYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDESVKKVVWLAIQAASQKWTMPLRDWRMAMSRFIIEFGDRLDG
HF

 

Blast result :
Comments
ISKpn47 is 97% aa similar to ISEic2.
References
1] Dongsheng Zhou (2018) Direct submission.
2] Liu,L., Feng,Y. and Zong,Z. (2018) Direct GenBank submission.