ISNarch1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LKNF01000204 ND Natrialbaceae archaeon
Natrialbaceae archaeon Tc-Br11_E2g28
DNA section
IS Length : 1675 bp

Ends


Left end : ACGAAACCTCGTTCTGACTCCGTAGTACAGTGATGTTTTTGAGCGCCTGCAAAGGATGCAGGCGCAGTCGATTGTGCCTGTACAGCACAGGTGATCCGAG II struct. : No
Right end : GTCCAGTCCTGAAACCTCAGCAACGCCTCCTGTGTGGGGCCCCGATGCGGAGAGGATGTCACTCCGGGTTGTCTGCCTACGACTGTAGGTAGGCATTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTAACAGCTGTTCTCACAGGGCGATCAA

DNA sequence

ACGAAACCTCGTTCTGACTCCGTAGTACAGTGATGTTTTTGAGCGCCTGCAAAGGATGCAGGCGCAGTCGATTGTGCCTGTACAGCACAGGTGATCCGAG
ATGCGACACTACCACCAGCGACAGGTGTACCATCAGCCGGAGGTGCGATGACCGATGGCGGTCGAACTGAACGAGATCGAAGAGGCTGAGGTTGAACTGG
AACAGTGGTTGGTTGAGCAGGCCGAGAACGGTATCCCGGAGACCGTCCTCGTAGGGATCCTTCGGGACTACGCAGACGACATCGAACAGCTCGGCTACGT
GCCGCGGATGTGGGGACACACCGACCACTGATTCACTGACTCTTCAGTCCTATGTCCAACGAACGTATCCGGACAGTTGTTGCGATACTCGTCGAGCCAA
CGGCGCACAAGGAACGGAAACTTCGCCGTCTGCAGTCGGCCTACCGCGAGGCTCTCGAAGCCGCCGTCAAGGCCGGCGCGACGACGATGACAGCGGTCAA
CGACATCGTGACGCCGTACGACCTCCCGTATCAGGCGAAAGACGCGTTGAAGCGTCACGTTCCGCAGCTTCTCGAGGACGGCACGCCGGACCTCGACGCG
GCGCAGCCGGTCCGGTTCACCAACCGTGCCGCCACGTTCGATCACTCGGCAGCGCGCACCCACGAGTTCTGCTGGGAAATCCCCCAACCGGGCCGCGGGA
CGAATTTCTGGATTCCGCTCGCAATCAACCCAGCTCAACGAGACTGGTGGGATCAGTTGCTCGCCGGCGACGCCACCGCCGGACAGTTGCAACTCGTCCA
CCAGCCGCGACACGACCGCTGGGAACTTCACGTCCCGCTGACGCTCCCAACCCCCGACACCGATGTCGACCACGATTCCTGTACGCCAATCGGGTTCGAC
GTCGGCGAGGCGATCCTGCTGACCGGCTGTGCGCTCCGGAACGGCCGGCCAGTCGACCCGTTGCTGATCGATGGTGGTCGGGCCCGCGACCTGCATCAGA
CGCTCCAGACGACGCTCCAGCGGCTGCAGGAACGCGACGCCGCCGCGTGGCGGATCGACCAACAGGCCGAATATTTCCGGAACGCGCTCGGCGACGAGAT
CGAGACGGCGACACGCCGGGCCGTCGACTACGCCGCCGGCTTCGAGCAGCCGATGATCGTCTTGGAGGCCCTCGAGTCGCTCCAGGAGGACCTCGACGTC
GGGCCCCATCTGACCCGGCGGCTTCACGCGTGGGCGTTCGCCCGACTACAGACGCGGTTCGCGGACAAGGCTGCCGACGCCGGGATTCCCGTCCGGTACG
TCGACCCGGCGTACACGTCCCAGATCTGCCACGCCTGCGGACACATCGGGACGCGGCCTGCACAGGCGGAGTTCCGTTGCACGAACGATGACTGCTGGGT
GTCGGTCTATCAGGCCGATATTAACGCGGCGGCCAATATCGCCAGCCGCCTCGATCCGTGGGGTGAGAGCTGCCCTTGGGAACCGGCCAGCGATGACACG
CTACGGAGTGGGCGCACCCGTGACAGTGCCACAGGACCTCGGGAGCAGAGCCGATCACAGTGACGACGCTCCCGCGTCCAGTCCTGAAACCTCAGCAACG
CCTCCTGTGTGGGGCCCCGATGCGGAGAGGATGTCACTCCGGGTTGTCTGCCTACGACTGTAGGTAGGCATTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
175 bp58 aa155329+No
ORF function : Passenger Gene
Annotation : conserved hypothetical proteinDescription :

ORF sequence :

MAVELNEIEEAEVELEQWLVEQAENGIPETVLVGILRDYADDIEQLGYVPRMWGHTDH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1212 bp403 aa3521563+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSNERIRTVVAILVEPTAHKERKLRRLQSAYREALEAAVKAGATTMTAVNDIVTPYDLPYQAKDALKRHVPQLLEDGTPDLDAAQPVRFTNRAATFDHSA
ARTHEFCWEIPQPGRGTNFWIPLAINPAQRDWWDQLLAGDATAGQLQLVHQPRHDRWELHVPLTLPTPDTDVDHDSCTPIGFDVGEAILLTGCALRNGRP
VDPLLIDGGRARDLHQTLQTTLQRLQERDAAAWRIDQQAEYFRNALGDEIETATRRAVDYAAGFEQPMIVLEALESLQEDLDVGPHLTRRLHAWAFARLQ
TRFADKAADAGIPVRYVDPAYTSQICHACGHIGTRPAQAEFRCTNDDCWVSVYQADINAAANIASRLDPWGESCPWEPASDDTLRSGRTRDSATGPREQS
RSQ

 

Blast result :
Comments
ISNarch1 is 70% aa similar (TnpB) to ISH12.
References
1] Friedhelm Pfeiffer (2019) Direct submission.
2] Vavourakis,C.D., Ghai,R., Rodriguez-Valera,F., Sorokin,D.Y., Tringe,S.G., Hugenholtz,P. and Muyzer,G. (2015) Direct GenBank submission.