ISAlw3
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Acinetobacter lwoffii | Acinetobacter lwoffii Acinetobacter lwoffii M2a |
DNA section
IS Length : 788 bp
Ends
IR Length : 24
IRL : GGTGGTGTTTCAAAAAGTATGCTGAAAAAAAGCAGGTTGGATTTTGATAA
IRR : GGTGGTGTTTCAAAAAGTATGCTGGCATTAAACGAATCCATTATTGATAT
Comments : 24/24
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
atattaattgaatacgactt | aataattg | aataataaggaagatcagca | 8 |
attctaacttcgatttattt | aaaaattg | atttactttgattttttatt | 8 |
DNA sequence
GGTGGTGTTTCAAAAAGTATGCTGAAAAAAAGCAGGTTGGATTTTGATAAAATAGAGAAATGCGAATAACTCTAGAAATCAAGTGTCCAGCCTGCCTAAG
TGACAGTATAAAGAAAAATGGCACAAAAGTAGATGGTAAGCAAAATTACCAATGTAAAATATGCAGACGTCAATTTATTGGTGATCATGCTCTCAGTTAT
CAAGGCTGTCACTCAGGTATCAAAACCAAAATATTACACCTCATGGTGCGAGGCAGTGGTGTCAGGGATATAGCAGAAATTGAAAGAGTAAGTATTGGTA
AAGTTCTACGGACACTTAGCCAATCAAAATATCAACTTCGAGCACAGCAAAGTCATTATGAAACCCTTGAAGTAGATGAGTTTTGGACTTTTGTTGGTCA
TAAGCAAAATAAACAATGGCTAATTTATGCCTATCATCGAGAAACAGGTGAAATTGTTGCTTATGTATGGGGTAACCGAGATTTAGCCACTGCAAAACGA
CTTAAATTAAAATTGAAGCAGTTAGGTGTAAGCTATACATGTATATCAAGTGACCATTGGGATAGCTTTGTTACGACCTTTAAAGAATGCAAACAGTTGA
TTGGTAAATTTTTCACTGTGGGTATAGAAGGCAATAATTGTCGATTACGGCATCGAATCAGGCGAGGCTTTAGGAGAAGCTGCAACTTCTCCAAAAAGCT
TGAAAATCATTTCAAAGCCTTTGATTTAGTGTTCTTTTATATCAATAATGGATTCGTTTAATGCCAGCATACTTTTTGAAACACCACC
TGACAGTATAAAGAAAAATGGCACAAAAGTAGATGGTAAGCAAAATTACCAATGTAAAATATGCAGACGTCAATTTATTGGTGATCATGCTCTCAGTTAT
CAAGGCTGTCACTCAGGTATCAAAACCAAAATATTACACCTCATGGTGCGAGGCAGTGGTGTCAGGGATATAGCAGAAATTGAAAGAGTAAGTATTGGTA
AAGTTCTACGGACACTTAGCCAATCAAAATATCAACTTCGAGCACAGCAAAGTCATTATGAAACCCTTGAAGTAGATGAGTTTTGGACTTTTGTTGGTCA
TAAGCAAAATAAACAATGGCTAATTTATGCCTATCATCGAGAAACAGGTGAAATTGTTGCTTATGTATGGGGTAACCGAGATTTAGCCACTGCAAAACGA
CTTAAATTAAAATTGAAGCAGTTAGGTGTAAGCTATACATGTATATCAAGTGACCATTGGGATAGCTTTGTTACGACCTTTAAAGAATGCAAACAGTTGA
TTGGTAAATTTTTCACTGTGGGTATAGAAGGCAATAATTGTCGATTACGGCATCGAATCAGGCGAGGCTTTAGGAGAAGCTGCAACTTCTCCAAAAAGCT
TGAAAATCATTTCAAAGCCTTTGATTTAGTGTTCTTTTATATCAATAATGGATTCGTTTAATGCCAGCATACTTTTTGAAACACCACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
702 bp | 233 aa | 60 | 761 | + | No |
Chemistry : DDE
ORF sequence :
MRITLEIKCPACLSDSIKKNGTKVDGKQNYQCKICRRQFIGDHALSYQGCHSGIKTKILHLMVRGSGVRDIAEIERVSIGKVLRTLSQSKYQLRAQQSHY
ETLEVDEFWTFVGHKQNKQWLIYAYHRETGEIVAYVWGNRDLATAKRLKLKLKQLGVSYTCISSDHWDSFVTTFKECKQLIGKFFTVGIEGNNCRLRHRI
RRGFRRSCNFSKKLENHFKAFDLVFFYINNGFV
ETLEVDEFWTFVGHKQNKQWLIYAYHRETGEIVAYVWGNRDLATAKRLKLKLKQLGVSYTCISSDHWDSFVTTFKECKQLIGKFFTVGIEGNNCRLRHRI
RRGFRRSCNFSKKLENHFKAFDLVFFYINNGFV
Blast result :
Comments
ISAlw3 is 92% aa similar to ISPa14.
References
1] Janos Kiss (2019) Direct submission.
2] Alexandra Veress, Tibor Nagy, Tímea Wilk, János Kömüves, Ferenc Olasz & János Kiss. (2020) Sci Rep 10, 2969.
2] Alexandra Veress, Tibor Nagy, Tímea Wilk, János Kömüves, Ferenc Olasz & János Kiss. (2020) Sci Rep 10, 2969.