ISAlw21
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Acinetobacter lwoffii | Acinetobacter lwoffii Acinetobacter lwoffii M2a Acinetobacter indicus SGAir0564 |
DNA section
IS Length : 738 bp
Ends
IR Length : 17
IRL : GGGGCTTAGGAAGTTAAGCATATTAAAAAGTATGGTAACTTCCTTATATG
IRR : GGGGCTTAGGAAGTTAAAGAGGGTTGTTACGGAGTATTTTAAGCAAATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATTAAACAGTAT | TTACTGG | AAATGCACTTTAA | 7 |
DNA sequence
GGGGCTTAGGAAGTTAAGCATATTAAAAAGTATGGTAACTTCCTTATATGAAAGCAAAAAATAGATACTATTCCCGTTCAAGGATCGCAGAAGCAAAATT
CAGGCAAATCATTCGCTTTTTTGCCATGGATTTTACTGCATCTGATACTGCTAAACTTACCAATATTTCTGTTCGCTCCATCAATACAATTTATATCAAA
TTGCGTAAAAAGATTGCTGTCCAATGTGAAGAAATATCTCCCTTCAATGGCATTATTGAACTGGATGAATCTTACTTTGGTGCTCGTCGTGTTCGTGGTA
AGCGAGGTCGTGGGGCATCAGGAAAAACCATTGTATTTGGGTTGCTCAAACGGGATGGAAATGTGTACACGGAAATTGTACCAGATTGCTCAAAAGCTAC
GCTGCAAGGGATTATCCGTGGGCATATAGAACTTGATTCAGTCATCAATACAGATGGATGGAGGGGGTATGATGGTTTAGTTGATATTGGCTTTGATAAG
CACTTAAGAGTAAATCACGGTGACAATGAATTTGCTTGTGGGGAACGTCATATTAACGGTATAGAATCCTTTTGGGGCTATGCGAAAAAGCGGCTCAGTA
AATTTAATGGAATTGACAAGAAGATGTTTTATTTGCATCTTAAAGAAACGGAATATCGCTTCAATCATCGCCATGGTAATTTATACCTCGATTTGCTTAA
AATACTCCGTAACAACCCTCTTTAACTTCCTAAGCCCC
CAGGCAAATCATTCGCTTTTTTGCCATGGATTTTACTGCATCTGATACTGCTAAACTTACCAATATTTCTGTTCGCTCCATCAATACAATTTATATCAAA
TTGCGTAAAAAGATTGCTGTCCAATGTGAAGAAATATCTCCCTTCAATGGCATTATTGAACTGGATGAATCTTACTTTGGTGCTCGTCGTGTTCGTGGTA
AGCGAGGTCGTGGGGCATCAGGAAAAACCATTGTATTTGGGTTGCTCAAACGGGATGGAAATGTGTACACGGAAATTGTACCAGATTGCTCAAAAGCTAC
GCTGCAAGGGATTATCCGTGGGCATATAGAACTTGATTCAGTCATCAATACAGATGGATGGAGGGGGTATGATGGTTTAGTTGATATTGGCTTTGATAAG
CACTTAAGAGTAAATCACGGTGACAATGAATTTGCTTGTGGGGAACGTCATATTAACGGTATAGAATCCTTTTGGGGCTATGCGAAAAAGCGGCTCAGTA
AATTTAATGGAATTGACAAGAAGATGTTTTATTTGCATCTTAAAGAAACGGAATATCGCTTCAATCATCGCCATGGTAATTTATACCTCGATTTGCTTAA
AATACTCCGTAACAACCCTCTTTAACTTCCTAAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
678 bp | 225 aa | 48 | 725 | + | No |
Chemistry : DDE
ORF sequence :
MKAKNRYYSHSRIAEAKFRQIIRFFAMDFTASDTAKLTNISVRSINTIYIKLRKKIAVQCEEISPFNGIVELDESYFGARRVRGKRGRGASGKTIVFGLL
KRDGNVYTEIVPDCSKATLQGIIRGHIELDSVINTDGWRGYDGLVDIGFDKHLRVNHGDNEFACGERHINGIESFWGYAKKRLSKFNGIDKKMFYLHLKE
TEYRFNHRHGNLYFDLLKILRDNPL
KRDGNVYTEIVPDCSKATLQGIIRGHIELDSVINTDGWRGYDGLVDIGFDKHLRVNHGDNEFACGERHINGIESFWGYAKKRLSKFNGIDKKMFYLHLKE
TEYRFNHRHGNLYFDLLKILRDNPL
Blast result :
Comments
ISAlw21 is 97% similar to ISAju1.
Five copies are flanked by 7-bp DR, while one copy has 8-bp DR.
Five copies are flanked by 7-bp DR, while one copy has 8-bp DR.
References
1] Janos Kiss (2019) Direct submission.
2] Alexandra Veress, Tibor Nagy, Tímea Wilk, János Kömüves, Ferenc Olasz & János Kiss. (2020) Sci Rep 10, 2969.
2] Alexandra Veress, Tibor Nagy, Tímea Wilk, János Kömüves, Ferenc Olasz & János Kiss. (2020) Sci Rep 10, 2969.