ISAlw33
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP019143.1 | ND | Acinetobacter lwoffii | Acinetobacter lwoffii Acinetobacter lwoffii ZS207 |
DNA section
IS Length : 1071 bp
Ends
IR Length : 20/26
IRL : CGCGGATTCAAATCCCAAGTGCGACACATTTGTAGTTAGTTGAAAAAGTT
IRR : GGCGGATTCAAGCGGCAAGTGCAACAGTATAAAAACCAGCCATAACATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ggtattaccttcagctttga | gat | cataaagtgatttggctaaa | 3 |
DNA sequence
CGCGGATTCAAATCCCAAGTGCGACACATTTGTAGTTAGTTGAAAAAGTTAGGTGTATTAGAATCATTAGACTTTTTCAACTCGCAATTGGAAAGCACAC
AATGAAGCAATACACCCAACTTTCTCAAGAAGAAAGATACGAAATTTATGCTGCCTTGAAAAGTAAATCTTCAATCTCTACTCTTTCCAGAGAGCTTGGT
CGTTCCAGATCAACCCTCTATCGTGAGATCAAAAGGAATACAGGGGAACGCGGCTATCGGGCTAAACAGGCTGATCGGTTTTCAAGTCAACGACGATACC
GTTCTTCATCTCAGATGACAGACTTCGCCATATTTTACATCCGTTATCTGATTGCTCTGGATTGGTCGCCTGAACAGATTTCCGGGGCATTGAAACAACG
TGGCTGGCTAGATGTCCCATCACATGAGTGGATCTATCAGTACATCTATCAGGATAAATCTAAGGGTGGAGAACTGCATCAACATTTAAGACACCAGAAA
ACCTATCGCAAGCGGGGTTATAAAAACACAGACCGTAGAGGCCAACTGGTTGATAGAACAAGCATTCACTGTCGCGACGAGGTCATAGACAAGCGTCAAC
GTCTTGGTGATTTTGAAGGTGATACCGTGATAGGCAAGAATCATAAGGGGGCATTATTAACCCTGGTTGATCGCAAGAGTCTGTATCTACATATCGCTCA
TTTGGGGAAAACTAGAACCTCAGCTAAAACGATCACGTGTGCTTTAGAGTGTTTGCGCCACAGTCATGCATATAGTGTGACCTTTGATAATGGCAAGGAA
TTCTCAGAGCATTGGCGGATAAAGGAAGCAGGTATAGAAACTTACTTTGCAGATCCGTACAAGTCGATTCAACGTGCCAGAAATGAAAATAGCAATGGTC
TGATCAGGCAATATCTGCCAAAATCCTCATCGTTTGATGATGTTTCAAAAGAACGGATAGAACAGATAGAATCTGCTCTAAATAATCGCCCCAGAAAGAC
ACTGGGATGGTATACGCCCAGTGATGTTATGGCTGGTTTTTATACTGTTGCACTTGCCGCTTGAATCCGCC
AATGAAGCAATACACCCAACTTTCTCAAGAAGAAAGATACGAAATTTATGCTGCCTTGAAAAGTAAATCTTCAATCTCTACTCTTTCCAGAGAGCTTGGT
CGTTCCAGATCAACCCTCTATCGTGAGATCAAAAGGAATACAGGGGAACGCGGCTATCGGGCTAAACAGGCTGATCGGTTTTCAAGTCAACGACGATACC
GTTCTTCATCTCAGATGACAGACTTCGCCATATTTTACATCCGTTATCTGATTGCTCTGGATTGGTCGCCTGAACAGATTTCCGGGGCATTGAAACAACG
TGGCTGGCTAGATGTCCCATCACATGAGTGGATCTATCAGTACATCTATCAGGATAAATCTAAGGGTGGAGAACTGCATCAACATTTAAGACACCAGAAA
ACCTATCGCAAGCGGGGTTATAAAAACACAGACCGTAGAGGCCAACTGGTTGATAGAACAAGCATTCACTGTCGCGACGAGGTCATAGACAAGCGTCAAC
GTCTTGGTGATTTTGAAGGTGATACCGTGATAGGCAAGAATCATAAGGGGGCATTATTAACCCTGGTTGATCGCAAGAGTCTGTATCTACATATCGCTCA
TTTGGGGAAAACTAGAACCTCAGCTAAAACGATCACGTGTGCTTTAGAGTGTTTGCGCCACAGTCATGCATATAGTGTGACCTTTGATAATGGCAAGGAA
TTCTCAGAGCATTGGCGGATAAAGGAAGCAGGTATAGAAACTTACTTTGCAGATCCGTACAAGTCGATTCAACGTGCCAGAAATGAAAATAGCAATGGTC
TGATCAGGCAATATCTGCCAAAATCCTCATCGTTTGATGATGTTTCAAAAGAACGGATAGAACAGATAGAATCTGCTCTAAATAATCGCCCCAGAAAGAC
ACTGGGATGGTATACGCCCAGTGATGTTATGGCTGGTTTTTATACTGTTGCACTTGCCGCTTGAATCCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 102 | 1064 | + | No |
Chemistry : DDE
ORF sequence :
MKQYTQLSQEERYEIYAALKSKSSISTLSRELGRSRSTLYREIKRNTGERGYRAKQADRFSSQRRYRSSSQMTDFAIFYIRYLIALDWSPEQISGALKQR
GWLDVPSHEWIYQYIYQDKSKGGELHQHLRHQKTYRKRGYKNTDRRGQLVDRTSIHCRDEVIDKRQRLGDFEGDTVIGKNHKGALLTLVDRKSLYLHIAH
LGKTRTSAKTITCALECLRHSHAYSVTFDNGKEFSEHWRIKEAGIETYFADPYKSIQRARNENSNGLIRQYLPKSSSFDDVSKERIEQIESALNNRPRKT
LGWYTPSDVMAGFYTVALAA
GWLDVPSHEWIYQYIYQDKSKGGELHQHLRHQKTYRKRGYKNTDRRGQLVDRTSIHCRDEVIDKRQRLGDFEGDTVIGKNHKGALLTLVDRKSLYLHIAH
LGKTRTSAKTITCALECLRHSHAYSVTFDNGKEFSEHWRIKEAGIETYFADPYKSIQRARNENSNGLIRQYLPKSSSFDDVSKERIEQIESALNNRPRKT
LGWYTPSDVMAGFYTVALAA
Blast result :
Comments
ISAlw33 is 80% similar to IS18.
References
1] Janos Kiss (2019) Direct submission.
2] Alexandra Veress, Tibor Nagy, Tímea Wilk, János Kömüves, Ferenc Olasz & János Kiss. (2020) Sci Rep 10, 2969.
2] Alexandra Veress, Tibor Nagy, Tímea Wilk, János Kömüves, Ferenc Olasz & János Kiss. (2020) Sci Rep 10, 2969.