ISAba54

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP082952 ND Acinetobacter baumannii
Acinetobacter baumannii Cl300
DNA section
IS Length : 1481 bp

Ends


IR Length : 19/24

IRL : tgttagaaaccatttaaagtgtctgtattctcaccaataaaaatgtctgg
IRR : tgttattcaccaattaaaatgtctatgcgataaaccatttaaaatgtcct

Insertion site


Left flankDirect repeatRight flankDR Length
taacataatggctgttatgcgaaacgagatctaccagctctcgttttttgttatg5

DNA sequence

TGTTAGAAACCATTTAAAGTGTCTGTATTCTCACCAATAAAAATGTCTGGTCTATGATGCGCATCAACATCATGGACTGGATATGAATCGAGATGCTGAT
CACTATGTCTGACAAGGAAATACAACGTATTGCAGTGCTGCAAGATGTTCGAGATCGACGTATTACACAAGTCCGTGCTGCTGAAATTCTGAATCTTTCA
ACCCGTCAAATTACCCGGTTATTGCACAAGCTCAAGCAAGACGGTATTTCAGGCCTGACACATGCCAGTCGTGGTCAACCGGGTCATCGTCGCCATGATG
AAGCCGTAAAGTCTGAATGCCTTTCCCTTATTTCTGAACATCTGCTGGGCTTTGGCCCAACCTTGGCGCATGAGAAGCTCAGCAGCATGTTTGACCTGAA
TATTCCTGTGGAAACGGTTCGTCGCTGGATGACTGCCAATGAACTCTGGATTCCGCGATCCAAGCGTCTGAAACGGCCATATCAGCCTCGATATAAGCGG
GATTGCTTCGGTGAACTGATCCAAATTGATGGCTCATATCATGACTGGTTTGAAGGTCGAGCTGCAAAATGCTGCTTGCTGGTTTATATCGATGATGCCA
CTGGAAAGCTGTTGCATCTGCGCTTTTGTGAGGCTGAAACCACCTTTGACTATATGCTTTCCACCCGAGCCTACATTGAACAATACGGCAAGCCGCTGGC
CTTTTATAGTGACAAACATTCGGTATTCAGAGTGAACCAGAAATCCAGTCAGGACAGTCAGATCACACAATTTGGCAGGATTCTGAATGAGTTAAACATT
GATATTATCTTTGCCAACTCCCCACAGGCCAAAGGTCGTGTGGAACGTGCTAACAGGACACTGCAGGATCGTCTGATCAAGGAGATGCGCCTGGAAGGCA
TCTGCTCGATTGCCGAAGCCAATGCATGGCTGCCCTGCTTTATTGAGCATTTCAATCAGAAGTTCGCCAAGTGTGCGAGAAATTCCAAGAACTTGCATCG
CCCTTTAACCGAATCTGATCTTGAACTGGAGGATATTTTCACCTGGCAGGAACCACGTAAGGTCACTAAGAATCTGACCATCACCTATGACAAATGTATT
TATATGCTTGAGCCAACAGTACTGAATCATAAGCTGGTTGGGCAATACATTTCATTTCTGGAGTATCCAGATGGCACTGTGGCCATCATGCATGAAGGAC
GGAAGATCAACTATAGCGTCTTCAATAAACTGGCTGGACTGCAGCAAAATGAAGTGGTTGAGAATAAACGGTTAGGCGCAGTCCTAGCTCATATTCAACA
ACAACACGAAGAGTTGGAAAAACAGAATAAACGTTCCCGTCTCAAGAAAAGTATGCCGAGCCGTAAAGCTCAGAAAGCTGTTATTGAACAAAGAAATTTA
AATCCTGTGCTTGACTCTTATGGTTAAAAACAGGACATTTTAAATGGTTTATCGCATAGACATTTTAATTGGTGAATAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1323 bp440 aa1051427+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSDKEIQRIAVLQDVRDRRITQVRAAEILNLSTRQITRLLHKLKQDGISGLTHASRGQPGHRRHDEAVKSECLSLISEHLLGFGPTLAHEKLSSMFDLNI
PVETVRRWMTANELWIPRSKRLKRPYQPRYKRDCFGELIQIDGSYHDWFEGRAAKCCLLVYIDDATGKLLHLRFCEAETTFDYMLSTRAYIEQYGKPLAF
YSDKHSVFRVNQKSSQDSQITQFGRILNELNIDIIFANSPQAKGRVERANRTLQDRLIKEMRLEGICSIAEANAWLPCFIEHFNQKFAKCARNSKNLHRP
LTESDLELEDIFTWQEPRKVTKNLTITYDKCIYMLEPTVLNHKLVGQYISFLEYPDGTVAIMHEGRKINYSVFNKLAGLQQNEVVENKRLGAVLAHIQQQ
HEELEKQNKRSRLKKSMPSRKAQKAVIEQRNLNPVLDSYG

 

Blast result :
Comments
ISAba54 is 97% aa similar to ISAlw22.
References
1] Harmer CJ and Hamidian M. (2021) Direct submission