ISKpn65

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LJCB01000029 ND Klebsiella pneumoniae
Klebsiella pneumoniae B199
Klebsiella oxytoca CAV1374 plasmid pCAV1374-49
Klebsiella pneumoniae KP2 plasmid pKP2_3
Klebsiella pneumoniae subsp. pneumoniae BK13048
DNA section
IS Length : 1980 bp

Ends


IR Length : 26/40

IRL : TGTCAGCACAAAGCGTTATTGTCGTCTCAGCACAATTCACACGCGTCGTG
IRR : TGTCTAGCCAATGTTGAAATGTCGTGCTCAAAACAAGTCAGAGATGACGT

Insertion site


Left flankDirect repeatRight flankDR Length
ACTGAGCCTTGACAAAGTTTGTAACAGCAAAGTTG5

DNA sequence

TGTCAGCACAAAGCGTTATTGTCGTCTCAGCACAATTCACACGCGTCGTGTACGCTAAGCCTTCATTTCGCTCGGCACAGGACCGCGATCTTATGTTGGT
GACTATGACAGACAAAGAACTTTACCGGCTTGGCATCATTCAGCGAGTATTTGACCGGGCTTTGCTTCAGCGCGACGCTGCAGATATTCTTGAACTCAGT
GTTCGTCAGGTGCAGCGTCTTGTGCGCCTGTACCGGACAGATGGCGCAACCGCGTTTGCATCTTCCCGCCGTGGACGTCCTGCAAACAACCGGATCGATG
AAGAAACACGCTGTAAAGCCCTGGATTTGATCCGGTGCCACTATTCAGATTTTGGCCCAACGCTCGCAACCGAAAAACTGGCTGAACGCCATCATATTCA
TCTCTCTGTTGAAACCGTCCGTAACTGGATGACAGCCGACGGTCTCTGGCGTCCTCATTCCCGCCGGCGAACCCGGGTTTACCAGCCACGCTATCGTCGC
GACTGTCTCGGCGAACTGGTTCAGATCGATGGCTCTCACCATGACTGGTTCGAAGGCAGAGCCCCAAAATGCTGTCTTCTGGTCTTCATGGATGATGCCA
CCGGTCGCCTGATGCACCTGCGATTCTGTGATTCAGAAAACGCGTTTGACTACATGATGGCTACCCGGCAATACATTGATAAACATGGTAAACCTGTCGC
ATTTTACAGCGACAAGCATGCGGTGTTCAGGGTCAGCGGACCGGAAAGCCGACGTACCGGCACAACCCAGTTCGGACGGGCTCTCCGGGAACTGGCGATC
GAATTGATTTGTGCCAACAGCAGCCAGGCAAAAGGTCGCGTGGAACGGGTAAATAAAACGCTCCAGGATCGCCTGATTAAAGAGATGCGCCTGCAGAACA
TCAGCTCGGTTGCTGAAGCCAATCAGTGGATTGAACATTTCATGTCCGATTTTAACCGTCGTTTCTCCCGGCCGGCAAAATACCCTAAAGATCTGCACCG
TCCGGTCACACAGAGTCCACTGGAGCTGAATGATATCTTCGCCTGGCAGGAGCTGCGGACCTTATCGAAAGCACTGACTTTTCAGTATGATAAAGTGATG
TATATCATTGAACCCACTGAACAAAATTCGCGCATAGCAGGTGAAAAAATTACCGTTTATGATTACCCTGACGGAAGCATTGCTTTCCGGCATCTGCACC
GGCCACTGGGCTATAAGATTTTCGATAAACTGGCCTGCGTTGATCAGGGTGCGGTTGTTGACAACAAACGACTGGGTGCCGTTTTGAAACTGGCGCAGCA
GAAACAGGACGAGCTGGAGGCTGAAGGAAAGCGAATGCGCAGCAAAAAAATGCCCCGCAGGCGTGCCCAGGAGCGCGTACTGGAAGAGCTAAGGGCAATC
AATCCGGTGCTGGCCAGCCCGCAGGATTTTGTCCCCAGCCTGAAGCGATGAGCCCTTCCCTCACCTGCAGATCTGACACGGCTGAATGATGAGAGAAAAA
TGGACGACAAAAAACCAGTGCTTCTGACATTACATGAAGCGTTGCGCCTGGATTTGATTGAGGCCTATGTGGCGCGGGAAATTACGCTGGCAAAAGTGGC
GGAATCCATGGAGCTCACCCGTCGTCAGTGCTCCCGCCTGATTAAACGCTATCGTGAGCTGGGGCCAGCTGGTCTGGTCAGCCGGCGCCGTGGAAAGCCC
GGCAACCATCAGTTAAACACCACCATCAGAGACCAGGCCCTGCAGCTTATTCGCTCACGCGGCCGGGGTATGAATCCGACAGCAATCTGGCGAATACTGA
CCACAGAATACAGTGTCCGGATTTCAAAAGAGACCGTTCGGAAACTGATGATTACTGAGAAAGCCTGGCATCCGCGACCATCCTTCAGGCCTGACTAAGA
CTAAAGAAGGAATTTTCCAGACTCTCCCAGACGTCATCTCTGACTTGTTTTGAGCACGACATTTCAACATTGGCTAGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1359 bp452 aa931451+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVTMTDKELYRLGIIQRVFDRALLQRDAADILELSVRQVQRLVRLYRTDGATAFASSRRGRPANNRIDEETRCKALDLIRCHYSDFGPTLATEKLAERH
HIHLSVETVRNWMTADGLWRPHSRRRTRVYQPRYRRDCLGELVQIDGSHHDWFEGRAPKCCLLVFMDDATGRLMHLRFCDSENAFDYMMATRQYIDKHGK
PVAFYSDKHAVFRVSGPESRRTGTTQFGRALRELAIELICANSSQAKGRVERVNKTLQDRLIKEMRLQNISSVAEANQWIEHFMSDFNRRFSRPAKYPKD
LHRPVTQSPLELNDIFAWQELRTLSKALTFQYDKVMYIIEPTEQNSRIAGEKITVYDYPDGSIAFRHLHRPLGYKIFDKLACVDQGAVVDNKRLGAVLKL
AQQKQDELEAEGKRMRSKKMPRRRAQERVLEELRAINPVLASPQDFVPSLKR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
399 bp132 aa15001898+No
ORF function : Passenger Gene
Annotation : integrase / helix-turn-helix domain containing proteinDescription :

ORF sequence :

MDDKKPVLLTLHEALRLDLIEAYVAREITLAKVAESMELTRRQCSRLIKRYRELGPAGLVSRRRGKPGNHQLNTTIRDQALQLIRSRGRGMNPTAIWRIL
TTEYSVRISKETVRKLMITEKAWHPRPSFRPD

 

Blast result :
Comments
ISKpn65 is 83% aa (transposase) similar to ISKpn63.
References
1] Patricia Siguier (2020) Direct submission.
2] Carasso,E., Salmon-Divon,M., Carmeli,Y., Banin,E. and Navon-Venezia,S. (2016) Genome Announc 4 (1), e01533-15.