ISKrh5
- Family IS30
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP097204 | ND | Kocuria rhizophila | Kocuria rhizophila Kocuria rhizophila Noodlococcus |
DNA section
IS Length : 1481 bp
Ends
IR Length : 24/26
IRL : CGGATTCAACTGGTTGTCGCAACACCCTGATCGTGAGGGTGTGTGGTGGG
IRR : CGGATTCAACTGGTCGTTGCAACACCGGCTTCTTGGAGAGACTTTAGCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGTCTCAAGG | GTCAGGTCAC | 0 | |
| GGCTACAGGG | GTCAGTGCCG | 0 | |
| TTAACCAGGG | GTCAGTTTAC | 0 |
DNA sequence
CGGATTCAACTGGTTGTCGCAACACCCTGATCGTGAGGGTGTGTGGTGGGACGAGATCCAGAGGAATCAGCGGTGCCGGCGGGTGCGCGTCGACAGTGGC
AAGCGGATCGGGCGATCAGACCGAAGCTGCGGTCGCCGGGGCATCCGAAGTACCGCCGGGATGTCGAGTCAGCGTTCTGGGATCAGATAGCGCTGGGATT
GCTGGCAGAGGAAGCGGCTCGTGTCATCGGCGTGGCCCCTGCGGTCGCGACGCGCTGGTACCGCCAGCATGGTGGGATGCGCCCGTTCATGCCGCCGACG
CCGTCAGGGCGTTACCTCAGCTTCACCGAGCGTGAAGAGATCGCGATTCTTGTCGCGAAAGGTCATGGTGTGCGGCAGATCGCGCGCACGATCGGCCGCG
ACCCAGGAACGATCTCGCGCGAGTTACGCCGAAACGCCGCGACACGGGGCCTCACGCGTGACTATCGCGCGTCGGTCGCGCAGTGGAAGGCCGACATGGC
AGCGCGGCGGCCGAAGGAAGCCAAGCTCGTGGCGAACCCGCGGTTGCGCGAGTACGTTGAGCAACGACTCAGCGGCCACATCGTCGACGAGGACGGAAAC
GTCGTGGCCGGGCCGCCGGTAGAGAAATGGACGGGCCGTAACAAGCCACGCCGCAAGGACCGGGCGTGGGTGCGCGCGTGGAGCCCGGAGCAGATCAGTA
GGCGCCTGCCCCTCGATTTCCCCGATGATGAGTCCATGCGCATCAGCCACGAGGCGATCTATCAATCCCTCTACATCCAAGGCCGAGGAGCGTTGAAACG
TGAACTCATCTTGTGCCTGCGCACCGGGCGTGCGCTGCGCGCCCCGCGGGCGCGCGCGCAGCGCACGACGTGGGCGCACGTCACGCCCGAAGCGCTCATC
AGTGAACGGCCTGCTGAAGCCGACGACCGTGCAGTGCCGGGCCATTGGGAGGGCGACTTGATCATCGGGCTGGAACGCTCCGCGATCGGCACGCTCGTGG
AGCGCACCACCCGCTACACGATGCTCGTTCACCTGCCCCGCGAGGAAGGCTATCGGCACAAGGAATCAGTGAAAAATGGGCCGGCCCTGGCCGGGTACGG
CGCGATCACGATGAAGAACGCGTTGTCGACGACGATGACACGTCTGCCGGTGGAGTTGACGCGTTCACTGACGTGGGACCGCGGCAAGGAAATGTCCGCG
CACATAGCGTTTCGTGTCGAGACAGGCATCCCGGTGTTCTTCGCCGATCCGCACTCACCGTGGCAGCGCGGCACCAACGAGAACACGAACGGCCTGCTTC
GTCAGTACTTCCCCAAGGGCACTGACCTGTCACGCTGGTCGGCACACGAGATCAACGCCGTGGCGCACACGCTGAACACTCGTCCACGCAAGAGCCTGGG
GTGGAAGACACCTGCCGAGGCACTGAACGAGCAGCTAAAGTCTCTCCAAGAAGCCGGTGTTGCAACGACCAGTTGAATCCG
AAGCGGATCGGGCGATCAGACCGAAGCTGCGGTCGCCGGGGCATCCGAAGTACCGCCGGGATGTCGAGTCAGCGTTCTGGGATCAGATAGCGCTGGGATT
GCTGGCAGAGGAAGCGGCTCGTGTCATCGGCGTGGCCCCTGCGGTCGCGACGCGCTGGTACCGCCAGCATGGTGGGATGCGCCCGTTCATGCCGCCGACG
CCGTCAGGGCGTTACCTCAGCTTCACCGAGCGTGAAGAGATCGCGATTCTTGTCGCGAAAGGTCATGGTGTGCGGCAGATCGCGCGCACGATCGGCCGCG
ACCCAGGAACGATCTCGCGCGAGTTACGCCGAAACGCCGCGACACGGGGCCTCACGCGTGACTATCGCGCGTCGGTCGCGCAGTGGAAGGCCGACATGGC
AGCGCGGCGGCCGAAGGAAGCCAAGCTCGTGGCGAACCCGCGGTTGCGCGAGTACGTTGAGCAACGACTCAGCGGCCACATCGTCGACGAGGACGGAAAC
GTCGTGGCCGGGCCGCCGGTAGAGAAATGGACGGGCCGTAACAAGCCACGCCGCAAGGACCGGGCGTGGGTGCGCGCGTGGAGCCCGGAGCAGATCAGTA
GGCGCCTGCCCCTCGATTTCCCCGATGATGAGTCCATGCGCATCAGCCACGAGGCGATCTATCAATCCCTCTACATCCAAGGCCGAGGAGCGTTGAAACG
TGAACTCATCTTGTGCCTGCGCACCGGGCGTGCGCTGCGCGCCCCGCGGGCGCGCGCGCAGCGCACGACGTGGGCGCACGTCACGCCCGAAGCGCTCATC
AGTGAACGGCCTGCTGAAGCCGACGACCGTGCAGTGCCGGGCCATTGGGAGGGCGACTTGATCATCGGGCTGGAACGCTCCGCGATCGGCACGCTCGTGG
AGCGCACCACCCGCTACACGATGCTCGTTCACCTGCCCCGCGAGGAAGGCTATCGGCACAAGGAATCAGTGAAAAATGGGCCGGCCCTGGCCGGGTACGG
CGCGATCACGATGAAGAACGCGTTGTCGACGACGATGACACGTCTGCCGGTGGAGTTGACGCGTTCACTGACGTGGGACCGCGGCAAGGAAATGTCCGCG
CACATAGCGTTTCGTGTCGAGACAGGCATCCCGGTGTTCTTCGCCGATCCGCACTCACCGTGGCAGCGCGGCACCAACGAGAACACGAACGGCCTGCTTC
GTCAGTACTTCCCCAAGGGCACTGACCTGTCACGCTGGTCGGCACACGAGATCAACGCCGTGGCGCACACGCTGAACACTCGTCCACGCAAGAGCCTGGG
GTGGAAGACACCTGCCGAGGCACTGAACGAGCAGCTAAAGTCTCTCCAAGAAGCCGGTGTTGCAACGACCAGTTGAATCCG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1434 bp | 477 aa | 43 | 1476 | + | No |
Chemistry : DDE
ORF sequence :
VVGRDPEESAVPAGARRQWQADRAIRPKLRSPGHPKYRRDVESAFWDQIALGLLAEEAARVIGVAPAVATRWYRQHGGMRPFMPPTPSGRYLSFTEREEI
AILVAKGHGVRQIARTIGRDPGTISRELRRNAATRGLTRDYRASVAQWKADMAARRPKEAKLVANPRLREYVEQRLSGHIVDEDGNVVAGPPVEKWTGRN
KPRRKDRAWVRAWSPEQISRRLPLDFPDDESMRISHEAIYQSLYIQGRGALKRELILCLRTGRALRAPRARAQRTTWAHVTPEALISERPAEADDRAVPG
HWEGDLIIGLERSAIGTLVERTTRYTMLVHLPREEGYRHKESVKNGPALAGYGAITMKNALSTTMTRLPVELTRSLTWDRGKEMSAHIAFRVETGIPVFF
ADPHSPWQRGTNENTNGLLRQYFPKGTDLSRWSAHEINAVAHTLNTRPRKSLGWKTPAEALNEQLKSLQEAGVATTS
AILVAKGHGVRQIARTIGRDPGTISRELRRNAATRGLTRDYRASVAQWKADMAARRPKEAKLVANPRLREYVEQRLSGHIVDEDGNVVAGPPVEKWTGRN
KPRRKDRAWVRAWSPEQISRRLPLDFPDDESMRISHEAIYQSLYIQGRGALKRELILCLRTGRALRAPRARAQRTTWAHVTPEALISERPAEADDRAVPG
HWEGDLIIGLERSAIGTLVERTTRYTMLVHLPREEGYRHKESVKNGPALAGYGAITMKNALSTTMTRLPVELTRSLTWDRGKEMSAHIAFRVETGIPVFF
ADPHSPWQRGTNENTNGLLRQYFPKGTDLSRWSAHEINAVAHTLNTRPRKSLGWKTPAEALNEQLKSLQEAGVATTS
Blast result :
Comments
ISKrh5 is 79% aa similar to ISPfr9.
ISKrh5 was found in the chromosome of the laboratory contaminant Kocuria rhizophila Noodlococcus. Two identical copies of ISKrh5 and a copy that differs by two SNPs are present in Noodlococcus.
ISKrh5 was found in the chromosome of the laboratory contaminant Kocuria rhizophila Noodlococcus. Two identical copies of ISKrh5 and a copy that differs by two SNPs are present in Noodlococcus.
References
1] Robert Moran (2022) Direct submission.
2] Ho,S.F., McCallum,G.E., Moran,R.A., McInnes,R.S., Wildsmith,A.J., Nicholls,S.M., Quick,J. and van Schaik,W. (2022) Direct GenBank submission.
2] Ho,S.F., McCallum,G.E., Moran,R.A., McInnes,R.S., Wildsmith,A.J., Nicholls,S.M., Quick,J. and van Schaik,W. (2022) Direct GenBank submission.