ISKrh6
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP097204 | ND | Kocuria rhizophila | Kocuria rhizophila Kocuria rhizophila Noodlococcus Kocuria rhizophila 28R2A-20 |
DNA section
IS Length : 1476 bp
Ends
Left end : CCCGTTACCTTGTGAGTGCCTCCGATGGTCGGGGGTCTGGTCGCTCGGCCGGGTATGGCTTTGTTGCCCTGCCATTGATGGTCCGGGGGGTGTTGCCGCC
Right end : TTCGCGATGCTCCGCAACGGCACCTACTACCAACCGCCCACCGCCCCTACCCCCGAACCAACCGCTCTCGCGGCTTGACTCGGAACATAGGGACACCCCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACCACCCCCG | ATGCCCGTGA | 0 | |
| CCGAGGGCGC | CGGAGCCGGG | 0 | |
| CTCGCGGACG | CCGCCGAGAC | 0 | |
| GCGCGCTGCA | CACGGCGCGC | 0 |
DNA sequence
CCCGTTACCTTGTGAGTGCCTCCGATGGTCGGGGGTCTGGTCGCTCGGCCGGGTATGGCTTTGTTGCCCTGCCATTGATGGTCCGGGGGGTGTTGCCGCC
CGGTCGAGAGACACGCGTTGACCGCTGATAGGGACACGGCCCGCCGCCGTGGTGGCGAGGTCTCTTCGTAACGTGGGTGCCGGCATCGGGTGTCAAGACT
GCGACCAGCGATGGTGCGCCAAGGAGGCTCATCATGGAGAACCGTTTCGCGGTAATCATCGGCCTGGATGTGGGCAAGACCGCCCACCACGGGTGCGCGC
TGGATGCGACCGGGCACAAACTGTTCGACAAACCCCTCCCGCAGGACGAGACCCAGCTGCGGGAGTTGTTCACCAGCCTGCAGGAGCGTGGTGAGGTGCT
GATGGTCGTGGACCAGCCCAACACCATCGGGGCGTTGCCGATCGCGGTGGCCAGAGACACCGGCTGCGCTGTGGCGTATCTTCCCGGGTTAGCTATGCGA
AAAGCAGCAGACCTGTATCCGGGAAGATCGAAGACCGACGCCAGAGACGCGTTCATCATCGCCGACACCGCCCGCACCATGCCCCACACGCTGCGGCAGG
TCGACCATGACAACGAGGTCCTCTCCGCGCTGAAAGTCCTCGCCGGGTTCGACGAGGACCTCGCCCACGAGACCACCAGGGCGTTGAACCGGATCCGTTC
GCTGCTCACCCAGATCCACCCCGCACTAGAACGTGTCTTCCCCGGCGGGACCCTCTCCACCGACCTCGTGCTGGAGCTGCTAGAGAAGTTCGGAGGCCCC
ACCGGGTTCACGTCCGCTGGGCGGGGGCGGGTTTTGAGGTTCGCTCGTTCCCATTCTCGCCGCGATCCCTCTGCGCTGGTCGAGAAGATCTTCACGGCGC
TGAGCGAGCAGACCGTGACAGTGCCGGCGACCGCGGCGGTCGAGCTCGTGATCCCCAGGGTGGCCGGGCAGGTCAAGGAGTTGAAAGCGCAACGGGCCAC
GGTCGCCCACGAAGTCGAGGCCATGCTGGAGGACTTCCCTCTCGCCTCGGTCTTGATGAGCATGCCGGGGATCGGCATCAAGACCGCAGCCCAGATCCTC
CTCGCGATCGGCGATGGCACCGGGTTCGAGACCGCGGGCCACCTGGCCGCGTATGCGGGCATCGCCCCGATCACACGGCGATCAGGGACGTCGATCCGTG
GTGAGTTCCCCGCTCGTTCGGGCAACAAACGATTGAAGAACGCACTGTTCTACTCCGCGTGGATCGCCTCGAATCGCGACCCGATCTCGAAGGCCTACTA
CGATCGCAAACGAGCCGAAGGAAAACGACACAACGCCGCCGTGATCTGCCTGGCCCGTCGTCGTTGCAACGTCATCTTCGCGATGCTCCGCAACGGCACC
TACTACCAACCGCCCACCGCCCCTACCCCCGAACCAACCGCTCTCGCGGCTTGACTCGGAACATAGGGACACCCCC
CGGTCGAGAGACACGCGTTGACCGCTGATAGGGACACGGCCCGCCGCCGTGGTGGCGAGGTCTCTTCGTAACGTGGGTGCCGGCATCGGGTGTCAAGACT
GCGACCAGCGATGGTGCGCCAAGGAGGCTCATCATGGAGAACCGTTTCGCGGTAATCATCGGCCTGGATGTGGGCAAGACCGCCCACCACGGGTGCGCGC
TGGATGCGACCGGGCACAAACTGTTCGACAAACCCCTCCCGCAGGACGAGACCCAGCTGCGGGAGTTGTTCACCAGCCTGCAGGAGCGTGGTGAGGTGCT
GATGGTCGTGGACCAGCCCAACACCATCGGGGCGTTGCCGATCGCGGTGGCCAGAGACACCGGCTGCGCTGTGGCGTATCTTCCCGGGTTAGCTATGCGA
AAAGCAGCAGACCTGTATCCGGGAAGATCGAAGACCGACGCCAGAGACGCGTTCATCATCGCCGACACCGCCCGCACCATGCCCCACACGCTGCGGCAGG
TCGACCATGACAACGAGGTCCTCTCCGCGCTGAAAGTCCTCGCCGGGTTCGACGAGGACCTCGCCCACGAGACCACCAGGGCGTTGAACCGGATCCGTTC
GCTGCTCACCCAGATCCACCCCGCACTAGAACGTGTCTTCCCCGGCGGGACCCTCTCCACCGACCTCGTGCTGGAGCTGCTAGAGAAGTTCGGAGGCCCC
ACCGGGTTCACGTCCGCTGGGCGGGGGCGGGTTTTGAGGTTCGCTCGTTCCCATTCTCGCCGCGATCCCTCTGCGCTGGTCGAGAAGATCTTCACGGCGC
TGAGCGAGCAGACCGTGACAGTGCCGGCGACCGCGGCGGTCGAGCTCGTGATCCCCAGGGTGGCCGGGCAGGTCAAGGAGTTGAAAGCGCAACGGGCCAC
GGTCGCCCACGAAGTCGAGGCCATGCTGGAGGACTTCCCTCTCGCCTCGGTCTTGATGAGCATGCCGGGGATCGGCATCAAGACCGCAGCCCAGATCCTC
CTCGCGATCGGCGATGGCACCGGGTTCGAGACCGCGGGCCACCTGGCCGCGTATGCGGGCATCGCCCCGATCACACGGCGATCAGGGACGTCGATCCGTG
GTGAGTTCCCCGCTCGTTCGGGCAACAAACGATTGAAGAACGCACTGTTCTACTCCGCGTGGATCGCCTCGAATCGCGACCCGATCTCGAAGGCCTACTA
CGATCGCAAACGAGCCGAAGGAAAACGACACAACGCCGCCGTGATCTGCCTGGCCCGTCGTCGTTGCAACGTCATCTTCGCGATGCTCCGCAACGGCACC
TACTACCAACCGCCCACCGCCCCTACCCCCGAACCAACCGCTCTCGCGGCTTGACTCGGAACATAGGGACACCCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1221 bp | 406 aa | 234 | 1454 | + | No |
Chemistry : DEDD
ORF sequence :
MENRFAVIIGLDVGKTAHHGCALDATGHKLFDKPLPQDETQLRELFTSLQERGEVLMVVDQPNTIGALPIAVARDTGCAVAYLPGLAMRKAADLYPGRSK
TDARDAFIIADTARTMPHTLRQVDHDNEVLSALKVLAGFDEDLAHETTRALNRIRSLLTQIHPALERVFPGGTLSTDLVLELLEKFGGPTGFTSAGRGRV
LRFARSHSRRDPSALVEKIFTALSEQTVTVPATAAVELVIPRVAGQVKELKAQRATVAHEVEAMLEDFPLASVLMSMPGIGIKTAAQILLAIGDGTGFET
AGHLAAYAGIAPITRRSGTSIRGEFPARSGNKRLKNALFYSAWIASNRDPISKAYYDRKRAEGKRHNAAVICLARRRCNVIFAMLRNGTYYQPPTAPTPE
PTALAA
TDARDAFIIADTARTMPHTLRQVDHDNEVLSALKVLAGFDEDLAHETTRALNRIRSLLTQIHPALERVFPGGTLSTDLVLELLEKFGGPTGFTSAGRGRV
LRFARSHSRRDPSALVEKIFTALSEQTVTVPATAAVELVIPRVAGQVKELKAQRATVAHEVEAMLEDFPLASVLMSMPGIGIKTAAQILLAIGDGTGFET
AGHLAAYAGIAPITRRSGTSIRGEFPARSGNKRLKNALFYSAWIASNRDPISKAYYDRKRAEGKRHNAAVICLARRRCNVIFAMLRNGTYYQPPTAPTPE
PTALAA
Blast result :
Comments
ISKrh6 is 75% aa similar to ISRhosp7.
ISKrh6 was found in the chromosome of the laboratory contaminant Kocuria rhizophila Noodlococcus. Two identical copies of ISKrh6 and a copy that differs by one SNP are present in Noodlococcus.
Additionnal Accession number : CP072262
A copy of ISKrh6 is present at a fourth position in the chromosome of K. rhizophila 28R2A-20, which was isolated from the environment associated with an Atlantic Ocean sponge.
ISKrh6 was found in the chromosome of the laboratory contaminant Kocuria rhizophila Noodlococcus. Two identical copies of ISKrh6 and a copy that differs by one SNP are present in Noodlococcus.
Additionnal Accession number : CP072262
A copy of ISKrh6 is present at a fourth position in the chromosome of K. rhizophila 28R2A-20, which was isolated from the environment associated with an Atlantic Ocean sponge.
References
1] Robert Moran (2022) Direct submission.
2] Ho,S.F., McCallum,G.E., Moran,R.A., McInnes,R.S., Wildsmith,A.J., Nicholls,S.M., Quick,J. and van Schaik,W. (2022) Direct GenBank submission.
2] Ho,S.F., McCallum,G.E., Moran,R.A., McInnes,R.S., Wildsmith,A.J., Nicholls,S.M., Quick,J. and van Schaik,W. (2022) Direct GenBank submission.