ISAchy1
- Family IS1202
- Group ISTde1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ACJX03000001 | ND | Acetomicrobium hydrogeniformans | Acetomicrobium hydrogeniformans ATCC BAA-1850 |
DNA section
IS Length : 1549 bp
Ends
IR Length : 17/24
IRL : TGTGGTTAATCCGTGATAATGTCATGTTGAACCTAATCTGAGAAAATGTC
IRR : TGTCAATAACCCATAAAAATGTCACCTAAACAACATAGTTTTATTCAGTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTGCTGTCAA | CATAGAGTAAAAATTGA | GCTTAGAAAA | 17 |
DNA sequence
TGTGGTTAATCCGTGATAATGTCATGTTGAACCTAATCTGAGAAAATGTCACCCATGAGAGAAGAAATATTCAACATGACAAAACAGGAAATGAAAAAGC
TCAGGGTCATTGACTCGGCTATTTCAGGGAATGTAACAGTTAAAGAGGCAGCGGGATTGCTTGGCCTAAGCGAACGTCAAGTGTTGAGGCTAAAGAAAGG
GGTATTGAAACAAGGAGCCGCGTTCATCACCCACAAAAATAAAGGTCGTAAGCCATCCCATGCAATTTCAGACACAATGAAAGATAAAATTGTAGCATTG
AAGCAATCGGATAGCTATCGAAACGCCAATTTCACTCATTTCAAGGAAATTCTTTCGGGGCAAGAGGGTATTAATATAAGTTACTCAAGCGTGTACCGGG
TCCTTAGCCAAGCCGGTATTTGTAGCTCCAAGAAAAAGCGAAGGAGTAAAAACCACCATCGCCGCAAGAGGAAAGAAAAAGAAGGCCTTCTGGTCCAAAT
CGATGCATCTCCACATGCTTGGTTCAATGAAACCATACACTCCCTACATGGTGCGATTGATGATGCCACTGGAGAAATACTTGCTTTACATTTTGAGAAA
AACGAATGCCTTAGGGGTTATTTTGAAATAATGGAACAAATGATTGAGCGTAAAGGGATCCCTGTTAACATATACAGCGATCGCCACACGATTTTTAAGT
CCCCTAAGAAAGAGGAACCAAGGATTGAACAGCAGCTAAAAGGTAAGCAAACGAATTTAACGCAGTTCGGTGAGGCAATGGAGGCACTTGAGATAAACCT
GATATTTGCTAGATCACCACAGGCAAAAGGACGTATTGAAAGGCTATGGGAAACGCTGCAAAATAGGTTGCCGGTTGAGTTTAAGATCCATGGTATTACA
TCAATGGAAACAGCCAATGAGTTTTTAATCGGCTATATCGATAAGTTTAACGAGCAGTTTACCGTGATACCAAAAGACCCCCAAGGCGCCTTCCGTGAAC
TTGAAGATGGTGTTGATCTTAGCACTGTCCTTTGTATCAAGGAGCAACGTGTGGTTTCTGATGGAAGCGGATTCTCTTATGGGGGCAAGTACTACCAGGT
AATGGGTAAGGAAAAACCGGTGGGGTTGCCCCGGGGGGTGACAATTACTGTGTTAAATAGCCATAAACGAGAGCTAAAAGTGATGTATAACGGGGTGGTA
TACGGAACCAACTACATGGCTCAAAAACCCAAGGAAAAGGCTTTACAGGAGCCATGCAAGGAGACACAAAGGATTGTAGCACGGCCAGATGATGACCACC
CTTGGAGGATACCGAAACAAAAAAGACCCAGGCTTTCCTATGATGAATCGGATAGTAAGCTCCTTGAAGCTCTCTTCAATTCGTCACGTGCCTGGGCATA
GAAACCTTCTTATAACCAGCTTACCCTTATTGGCCCGGTTTATCAATGGCATTTTTGCTTAAGGCCGGACTCCGTCGAAAACGACTAAGGTGACATTTTT
ACTGAATAAAACTATGTTGTTTAGGTGACATTTTTATGGGTTATTGACA
TCAGGGTCATTGACTCGGCTATTTCAGGGAATGTAACAGTTAAAGAGGCAGCGGGATTGCTTGGCCTAAGCGAACGTCAAGTGTTGAGGCTAAAGAAAGG
GGTATTGAAACAAGGAGCCGCGTTCATCACCCACAAAAATAAAGGTCGTAAGCCATCCCATGCAATTTCAGACACAATGAAAGATAAAATTGTAGCATTG
AAGCAATCGGATAGCTATCGAAACGCCAATTTCACTCATTTCAAGGAAATTCTTTCGGGGCAAGAGGGTATTAATATAAGTTACTCAAGCGTGTACCGGG
TCCTTAGCCAAGCCGGTATTTGTAGCTCCAAGAAAAAGCGAAGGAGTAAAAACCACCATCGCCGCAAGAGGAAAGAAAAAGAAGGCCTTCTGGTCCAAAT
CGATGCATCTCCACATGCTTGGTTCAATGAAACCATACACTCCCTACATGGTGCGATTGATGATGCCACTGGAGAAATACTTGCTTTACATTTTGAGAAA
AACGAATGCCTTAGGGGTTATTTTGAAATAATGGAACAAATGATTGAGCGTAAAGGGATCCCTGTTAACATATACAGCGATCGCCACACGATTTTTAAGT
CCCCTAAGAAAGAGGAACCAAGGATTGAACAGCAGCTAAAAGGTAAGCAAACGAATTTAACGCAGTTCGGTGAGGCAATGGAGGCACTTGAGATAAACCT
GATATTTGCTAGATCACCACAGGCAAAAGGACGTATTGAAAGGCTATGGGAAACGCTGCAAAATAGGTTGCCGGTTGAGTTTAAGATCCATGGTATTACA
TCAATGGAAACAGCCAATGAGTTTTTAATCGGCTATATCGATAAGTTTAACGAGCAGTTTACCGTGATACCAAAAGACCCCCAAGGCGCCTTCCGTGAAC
TTGAAGATGGTGTTGATCTTAGCACTGTCCTTTGTATCAAGGAGCAACGTGTGGTTTCTGATGGAAGCGGATTCTCTTATGGGGGCAAGTACTACCAGGT
AATGGGTAAGGAAAAACCGGTGGGGTTGCCCCGGGGGGTGACAATTACTGTGTTAAATAGCCATAAACGAGAGCTAAAAGTGATGTATAACGGGGTGGTA
TACGGAACCAACTACATGGCTCAAAAACCCAAGGAAAAGGCTTTACAGGAGCCATGCAAGGAGACACAAAGGATTGTAGCACGGCCAGATGATGACCACC
CTTGGAGGATACCGAAACAAAAAAGACCCAGGCTTTCCTATGATGAATCGGATAGTAAGCTCCTTGAAGCTCTCTTCAATTCGTCACGTGCCTGGGCATA
GAAACCTTCTTATAACCAGCTTACCCTTATTGGCCCGGTTTATCAATGGCATTTTTGCTTAAGGCCGGACTCCGTCGAAAACGACTAAGGTGACATTTTT
ACTGAATAAAACTATGTTGTTTAGGTGACATTTTTATGGGTTATTGACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1347 bp | 448 aa | 55 | 1401 | + | No |
Chemistry : DDE
ORF sequence :
MREEIFNMTKQEMKKLRVIDSAISGNVTVKEAAGLLGLSERQVLRLKKGVLKQGAAFITHKNKGRKPSHAISDTMKDKIVALKQSDSYRNANFTHFKEIL
SGQEGINISYSSVYRVLSQAGICSSKKKRRSKNHHRRKRKEKEGLLVQIDASPHAWFNETIHSLHGAIDDATGEILALHFEKNECLRGYFEIMEQMIERK
GIPVNIYSDRHTIFKSPKKEEPRIEQQLKGKQTNLTQFGEAMEALEINLIFARSPQAKGRIERLWETLQNRLPVEFKIHGITSMETANEFLIGYIDKFNE
QFTVIPKDPQGAFRELEDGVDLSTVLCIKEQRVVSDGSGFSYGGKYYQVMGKEKPVGLPRGVTITVLNSHKRELKVMYNGVVYGTNYMAQKPKEKALQEP
CKETQRIVARPDDDHPWRIPKQKRPRLSYDESDSKLLEALFNSSRAWA
SGQEGINISYSSVYRVLSQAGICSSKKKRRSKNHHRRKRKEKEGLLVQIDASPHAWFNETIHSLHGAIDDATGEILALHFEKNECLRGYFEIMEQMIERK
GIPVNIYSDRHTIFKSPKKEEPRIEQQLKGKQTNLTQFGEAMEALEINLIFARSPQAKGRIERLWETLQNRLPVEFKIHGITSMETANEFLIGYIDKFNE
QFTVIPKDPQGAFRELEDGVDLSTVLCIKEQRVVSDGSGFSYGGKYYQVMGKEKPVGLPRGVTITVLNSHKRELKVMYNGVVYGTNYMAQKPKEKALQEP
CKETQRIVARPDDDHPWRIPKQKRPRLSYDESDSKLLEALFNSSRAWA
Blast result :
Comments
ISAchy1 is 69% aa similar to ISSsac1.
References
1] Patricia Siguier (2020) Direct submission.
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2012) Direct GenBank submission.
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2012) Direct GenBank submission.