ISAlba4
- Family IS1202
- Group ISAba32
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| VAZV01000093 | ND | Alphaproteobacteria bacterium | Alphaproteobacteria bacterium isolate AP_17 |
DNA section
IS Length : 1552 bp
Ends
IR Length : 24/35
IRL : TGTAGACGCCAGATAGAGAAGTCACCGTTGGCCCCGATCGAGATGTCACT
IRR : TGTCGGCGCCATTTAGAAAAGTCGCTTTTTCCGCCCGTTAGAAATGTCAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCACGAATGGCGAA | CCGACAGCGGCCACTGC | 0 |
DNA sequence
TGTAGACGCCAGATAGAGAAGTCACCGTTGGCCCCGATCGAGATGTCACTCTCCCCGGTTTTCGAATCGGATGGGGAGCTGGTGGCCGATGACGGTGATT
TTGATGAGCCGTTCGGAGATCGATCGGATGACTGTTCTGCGCGATCTGGCGGAGGAACGGATTAGGGTTTCTGAGGCGGCGACGCTGATGGGAGTTGGCC
GTCGCCAGGTGTTTCGGTTAGCCAAGGCGTTTCGGCGGCGCGGCCCTGCTGCTCTTGCATCGCGCCGACGCGGCAAGCCAAGCAACCGGGCTTACCCGGC
GGTTCTGCGAACGGAAGTGATCGGCATCATCCGCGAGCGCTATGCGGACTTCGGGCCGACGCTTGCGGGCGAGAAGCTTGCGGAACTGCATGGCATCCAT
CTTGGCCGCGAGACGATCCGGCAATGGATGATGGCGGCCGGGCTGTGGAAGGACCGCCGACAGCGGCTGCGGCCAGTGCATCAGCCGCGCTACCGTCGGG
ATTGCGTTGGCGAACTGATCCAGATCGACGGCTCGCACCATTGGTGGTTCGAGACGCGCGGACCGCAATGCACGCTGCTGGTCTACATCGACGATGCAAC
AAGCCGGCTGATGCATCTGCGGTTCGTGGAGACGGAGTCGACGTTCGATTATTTCGAGGCGACACGGGCCTATCTGGAGCGCTATGGCAAGCCGATCGCG
TTCTACTCCGACAAGCATGCCGTGTTTCGGGTCAGCAAGAAAGATGCGGCGGGCGGTGATGGAATGACGCAGTTTGGGCGGGCTCTGCACGCGCTCAACA
TCGACATCATCTGTGCCAATTCCTCGCAGGCCAAGGGCCGCGTGGAGCGTGCGAACGGAACGCTACAGGACCGGCTGGTGAAGGAGATGCGGTTGCGCGG
CATCGACACCGTGGCGGCTGGCAATGCGTTCCTGTCGATGTTCATGGCCGACTACAATGCTCGCTTCGCCAAGGCGCCGTTTGAGGAGCGGGACCTGCAT
CGTCCTCTTACTGGCGAGGACGATCTCGATGACGCCTTTGCCTGGAAGGAGGATCGCACACTCTCCAAAAATCTGACGCTGCAATATGACCAGGTGCTGT
TCATTCTGGAGCCGAATGCGATCACGCGATCGCTGGCCTGCAAGCGGGTTATGGTCCTCGATTATCCAGATGGCCGATTGGCAATCCGGCACAATGGCGT
GGACCTGCCCTATCGGACATTCGACAAGCGGCAGCAGGTCAACCAGGCCGCCATTGTGGAGAACAAGCGGCTCGGTCCGGTGCTGGCTTATATCGCCGAG
AAACAGAAGGAGCTGGACATGTCGCGCTCGTCCAAGGCGCCGCGACGGCGTGGCCAGCGCAATCACATCTTCAAGGTCGGATAGGCCGGAGCAAGGCCGC
CTCGGGGTGGCGGCTCCGCAATTTGGGGCTCCGCGCGCCACCCCGAGACGGCACCCCTTCAACCCACAACCAGGAAAGGCGGCTACCCCAACTCCCGAAA
AAGTGACATTTCTAACGGGCGGAAAAAGCGACTTTTCTAAATGGCGCCGACA
TTGATGAGCCGTTCGGAGATCGATCGGATGACTGTTCTGCGCGATCTGGCGGAGGAACGGATTAGGGTTTCTGAGGCGGCGACGCTGATGGGAGTTGGCC
GTCGCCAGGTGTTTCGGTTAGCCAAGGCGTTTCGGCGGCGCGGCCCTGCTGCTCTTGCATCGCGCCGACGCGGCAAGCCAAGCAACCGGGCTTACCCGGC
GGTTCTGCGAACGGAAGTGATCGGCATCATCCGCGAGCGCTATGCGGACTTCGGGCCGACGCTTGCGGGCGAGAAGCTTGCGGAACTGCATGGCATCCAT
CTTGGCCGCGAGACGATCCGGCAATGGATGATGGCGGCCGGGCTGTGGAAGGACCGCCGACAGCGGCTGCGGCCAGTGCATCAGCCGCGCTACCGTCGGG
ATTGCGTTGGCGAACTGATCCAGATCGACGGCTCGCACCATTGGTGGTTCGAGACGCGCGGACCGCAATGCACGCTGCTGGTCTACATCGACGATGCAAC
AAGCCGGCTGATGCATCTGCGGTTCGTGGAGACGGAGTCGACGTTCGATTATTTCGAGGCGACACGGGCCTATCTGGAGCGCTATGGCAAGCCGATCGCG
TTCTACTCCGACAAGCATGCCGTGTTTCGGGTCAGCAAGAAAGATGCGGCGGGCGGTGATGGAATGACGCAGTTTGGGCGGGCTCTGCACGCGCTCAACA
TCGACATCATCTGTGCCAATTCCTCGCAGGCCAAGGGCCGCGTGGAGCGTGCGAACGGAACGCTACAGGACCGGCTGGTGAAGGAGATGCGGTTGCGCGG
CATCGACACCGTGGCGGCTGGCAATGCGTTCCTGTCGATGTTCATGGCCGACTACAATGCTCGCTTCGCCAAGGCGCCGTTTGAGGAGCGGGACCTGCAT
CGTCCTCTTACTGGCGAGGACGATCTCGATGACGCCTTTGCCTGGAAGGAGGATCGCACACTCTCCAAAAATCTGACGCTGCAATATGACCAGGTGCTGT
TCATTCTGGAGCCGAATGCGATCACGCGATCGCTGGCCTGCAAGCGGGTTATGGTCCTCGATTATCCAGATGGCCGATTGGCAATCCGGCACAATGGCGT
GGACCTGCCCTATCGGACATTCGACAAGCGGCAGCAGGTCAACCAGGCCGCCATTGTGGAGAACAAGCGGCTCGGTCCGGTGCTGGCTTATATCGCCGAG
AAACAGAAGGAGCTGGACATGTCGCGCTCGTCCAAGGCGCCGCGACGGCGTGGCCAGCGCAATCACATCTTCAAGGTCGGATAGGCCGGAGCAAGGCCGC
CTCGGGGTGGCGGCTCCGCAATTTGGGGCTCCGCGCGCCACCCCGAGACGGCACCCCTTCAACCCACAACCAGGAAAGGCGGCTACCCCAACTCCCGAAA
AAGTGACATTTCTAACGGGCGGAAAAAGCGACTTTTCTAAATGGCGCCGACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1296 bp | 431 aa | 89 | 1384 | + | No |
Chemistry : DDE
ORF sequence :
MTVILMSRSEIDRMTVLRDLAEERIRVSEAATLMGVGRRQVFRLAKAFRRRGPAALASRRRGKPSNRAYPAVLRTEVIGIIRERYADFGPTLAGEKLAEL
HGIHLGRETIRQWMMAAGLWKDRRQRLRPVHQPRYRRDCVGELIQIDGSHHWWFETRGPQCTLLVYIDDATSRLMHLRFVETESTFDYFEATRAYLERYG
KPIAFYSDKHAVFRVSKKDAAGGDGMTQFGRALHALNIDIICANSSQAKGRVERANGTLQDRLVKEMRLRGIDTVAAGNAFLSMFMADYNARFAKAPFEE
RDLHRPLTGEDDLDDAFAWKEDRTLSKNLTLQYDQVLFILEPNAITRSLACKRVMVLDYPDGRLAIRHNGVDLPYRTFDKRQQVNQAAIVENKRLGPVLA
YIAEKQKELDMSRSSKAPRRRGQRNHIFKVG
HGIHLGRETIRQWMMAAGLWKDRRQRLRPVHQPRYRRDCVGELIQIDGSHHWWFETRGPQCTLLVYIDDATSRLMHLRFVETESTFDYFEATRAYLERYG
KPIAFYSDKHAVFRVSKKDAAGGDGMTQFGRALHALNIDIICANSSQAKGRVERANGTLQDRLVKEMRLRGIDTVAAGNAFLSMFMADYNARFAKAPFEE
RDLHRPLTGEDDLDDAFAWKEDRTLSKNLTLQYDQVLFILEPNAITRSLACKRVMVLDYPDGRLAIRHNGVDLPYRTFDKRQQVNQAAIVENKRLGPVLA
YIAEKQKELDMSRSSKAPRRRGQRNHIFKVG
Blast result :
Comments
ISAlba4 is 78% aa similar to ISMex6.
References
1] Patricia Siguier (2020) Direct submission.
2] Diamond,S., Andeer,P.F., Li,Z., Crits-Christoph,A., Burstein,D., Anantharaman,K., Lane,K.R., Thomas,B.C., Pan,C., Northen,T.R. and Banfield,J.F. (2019) Nat Microbiol.
2] Diamond,S., Andeer,P.F., Li,Z., Crits-Christoph,A., Burstein,D., Anantharaman,K., Lane,K.R., Thomas,B.C., Pan,C., Northen,T.R. and Banfield,J.F. (2019) Nat Microbiol.