ISAoba1
- Family IS1202
- Group ISAba32
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| JAAKFV010000042 | ND | Anoxychlamydiales bacterium | Anoxychlamydiales bacterium isolate KR126_chlam_4 Candidatus Anoxychlamydiales bacterium isolate KR126_chlam_4 |
DNA section
IS Length : 1641 bp
Ends
IR Length : 23/30
IRL : TGTGGGCGCAACATGATAATGTCACTACTAAAACTTTTTTGAAATGTCAC
IRR : TGTCAACGCAAAATGAATATGTCACTATCTTTAGCAAAATAGAAATGTCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TATAAATCAATCGGTAGT | ATTTTTT | CAAAAATTTTGATAGTT | 7 |
DNA sequence
TGTGGGCGCAACATGATAATGTCACTACTAAAACTTTTTTGAAATGTCACTATTGATGTTATAATCTTCCAAACTCTTTCAAAACTGGAGTAAATATGGA
GATTATAAAAATGAGTTCAAAAGAACTGGAAAGAGGTGAGGTAATAGCAAAGGTTTTAGATGGGATGTTAAGTTATAAAAAAGCAAAAGAGCAATTAGCT
CTTAGTTTTAGGCAAACATATCGACTATGTAAAAAATATAGAGAGAATGGTTTGCAAGGCTTAGCTCATCAAAATCGTGGAAGATCAAGTAATAGAAAAA
TCAGCCCTAGAACTGGAAATATAGTACTAGAGCTGATCAATAAACATTATCCTGACTTTGGCCCTCAACTCATCAAAGAACAATTGGAAGAACGCCACCA
TTTACGTTTTAGCCGTGAAAGGATCAGGCGTTTAATGATAAAAGAAAATCTTTGGAAAGTAAATAGAAGAAAAACTTTATCTGTATATCAAAGAAGATGC
AGGAGATCTCAAGAGGGTGAATTAATACAGATCGATGGCAGTTATGAAAAATGGTTTGAAGATAGATCCGAAAAGTGCTGTTTAATCAACATGGTTGATG
ATGCTACCGGAAAGCTTCAAGAATTATACTTCGTAAAACATGAAAGCACAGAAAGCTATTTGAAATGCATGAATCGATACATAAAAAGACACGGCATATT
AGCATTATATTCAGACAGGCATACTATTTTCAAGTCTCCTAAATCTGAATTAAGGCATTTAACACATTTTGGTAAGGCTATGAAAGAGCTCGATATAGAA
TTAATATTTGCTAATACACCTCAAGCTAAAGGCCGTGTAGAAAGATCTCATGGGACTCTACAAGATAGATTGATTAAGCTAATGCGTTTAGAAAATATTT
CTTCTATTGAAGAAGGCAATCAATACTTAGAAAAATTTAGAATTGATTATAATAAACGTTTTGGAAGGGCTCCTCAAGATCTTAAAGATGGACACAAAGA
ACTGCCTATAAATATTAAATTAGAGAATGTTTTATGTGTAAAAGAAGAAAGAAAAATATCCAAAAACTTAACTTTTCATTATCAACACAAAACCTATCAA
ATAATACAAAAAAACAACGGCAGGAGGCTTATGGGAAAGCCCGTTTTAATCTACGATATTAATGATAAATTAATAGTCGAGTGCCATGGAGAGCAATATG
AATACACCATATATGAAGAAAGGCCCTACGCTATAAAAGTAATGGATAGAAAAAGACTAGAAGCGTTTTTAGATAAGAAAAAAGCAATGACTATAAAAGA
GAGAATTAGAAAAAAAATATCTATAAACTTTTAATTTTAAAAGTCTCCCCCCATGGGGGGAGACATAATGTAAACCAACCAATGATGAGAGAGTGTATGA
TATCAAATAAGTGACATTTCTATTTTGCTAAAGATAGTGACATATTCATTTTGCGTTGACA
GATTATAAAAATGAGTTCAAAAGAACTGGAAAGAGGTGAGGTAATAGCAAAGGTTTTAGATGGGATGTTAAGTTATAAAAAAGCAAAAGAGCAATTAGCT
CTTAGTTTTAGGCAAACATATCGACTATGTAAAAAATATAGAGAGAATGGTTTGCAAGGCTTAGCTCATCAAAATCGTGGAAGATCAAGTAATAGAAAAA
TCAGCCCTAGAACTGGAAATATAGTACTAGAGCTGATCAATAAACATTATCCTGACTTTGGCCCTCAACTCATCAAAGAACAATTGGAAGAACGCCACCA
TTTACGTTTTAGCCGTGAAAGGATCAGGCGTTTAATGATAAAAGAAAATCTTTGGAAAGTAAATAGAAGAAAAACTTTATCTGTATATCAAAGAAGATGC
AGGAGATCTCAAGAGGGTGAATTAATACAGATCGATGGCAGTTATGAAAAATGGTTTGAAGATAGATCCGAAAAGTGCTGTTTAATCAACATGGTTGATG
ATGCTACCGGAAAGCTTCAAGAATTATACTTCGTAAAACATGAAAGCACAGAAAGCTATTTGAAATGCATGAATCGATACATAAAAAGACACGGCATATT
AGCATTATATTCAGACAGGCATACTATTTTCAAGTCTCCTAAATCTGAATTAAGGCATTTAACACATTTTGGTAAGGCTATGAAAGAGCTCGATATAGAA
TTAATATTTGCTAATACACCTCAAGCTAAAGGCCGTGTAGAAAGATCTCATGGGACTCTACAAGATAGATTGATTAAGCTAATGCGTTTAGAAAATATTT
CTTCTATTGAAGAAGGCAATCAATACTTAGAAAAATTTAGAATTGATTATAATAAACGTTTTGGAAGGGCTCCTCAAGATCTTAAAGATGGACACAAAGA
ACTGCCTATAAATATTAAATTAGAGAATGTTTTATGTGTAAAAGAAGAAAGAAAAATATCCAAAAACTTAACTTTTCATTATCAACACAAAACCTATCAA
ATAATACAAAAAAACAACGGCAGGAGGCTTATGGGAAAGCCCGTTTTAATCTACGATATTAATGATAAATTAATAGTCGAGTGCCATGGAGAGCAATATG
AATACACCATATATGAAGAAAGGCCCTACGCTATAAAAGTAATGGATAGAAAAAGACTAGAAGCGTTTTTAGATAAGAAAAAAGCAATGACTATAAAAGA
GAGAATTAGAAAAAAAATATCTATAAACTTTTAATTTTAAAAGTCTCCCCCCATGGGGGGAGACATAATGTAAACCAACCAATGATGAGAGAGTGTATGA
TATCAAATAAGTGACATTTCTATTTTGCTAAAGATAGTGACATATTCATTTTGCGTTGACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1239 bp | 412 aa | 96 | 1334 | + | No |
Chemistry : DDE
ORF sequence :
MEIIKMSSKELERGEVIAKVLDGMLSYKKAKEQLALSFRQTYRLCKKYRENGLQGLAHQNRGRSSNRKISPRTGNIVLELINKHYPDFGPQLIKEQLEER
HHLRFSRERIRRLMIKENLWKVNRRKTLSVYQRRCRRSQEGELIQIDGSYEKWFEDRSEKCCLINMVDDATGKLQELYFVKHESTESYLKCMNRYIKRHG
ILALYSDRHTIFKSPKSELRHLTHFGKAMKELDIELIFANTPQAKGRVERSHGTLQDRLIKLMRLENISSIEEGNQYLEKFRIDYNKRFGRAPQDLKDGH
KELPINIKLENVLCVKEERKISKNLTFHYQHKTYQIIQKNNGRRLMGKPVLIYDINDKLIVECHGEQYEYTIYEERPYAIKVMDRKRLEAFLDKKKAMTI
KERIRKKISINF
HHLRFSRERIRRLMIKENLWKVNRRKTLSVYQRRCRRSQEGELIQIDGSYEKWFEDRSEKCCLINMVDDATGKLQELYFVKHESTESYLKCMNRYIKRHG
ILALYSDRHTIFKSPKSELRHLTHFGKAMKELDIELIFANTPQAKGRVERSHGTLQDRLIKLMRLENISSIEEGNQYLEKFRIDYNKRFGRAPQDLKDGH
KELPINIKLENVLCVKEERKISKNLTFHYQHKTYQIIQKNNGRRLMGKPVLIYDINDKLIVECHGEQYEYTIYEERPYAIKVMDRKRLEAFLDKKKAMTI
KERIRKKISINF
Blast result :
Comments
ISAoba1 is 60% aa similar to ISMahy1.
References
1] Patricia Siguier (2020) Direct submission.
2] Dharamshi,J.E., Tamarit,D., Eme,L., Stairs,C., Martijn,J., Homa,F., Jorgensen,S.L., Spang,A. and Ettema,T.J.G. (2020) Direct GenBank submission.
2] Dharamshi,J.E., Tamarit,D., Eme,L., Stairs,C., Martijn,J., Homa,F., Jorgensen,S.L., Spang,A. and Ettema,T.J.G. (2020) Direct GenBank submission.