ISKpn63

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014005 ND Klebsiella pneumoniae
Klebsiella pneumoniae subsp. pneumoniae NUHL24835 plasmid unnamed1
DNA section
IS Length : 2486 bp

Ends


IR Length : 17/26

IRL : TGTAGCTCCCATATTCTAATGTCACTTTTAACCCATTTAGTGATGTCACT
IRR : TGTTATTACAAGATTAAAAAGTCACTCGGTTTAGCCAGTTTCAAATGTCA

Insertion site


Left flankDirect repeatRight flankDR Length
ATTAAGCGTAGTTGCACTGCAGTGGCT5

DNA sequence

TGTAGCTCCCATATTCTAATGTCACTTTTAACCCATTTAGTGATGTCACTTTTTCTGGCATAAAGGATCCAATCCTCAGGCCATGGAGACATCAGGATGC
TTGTGACCATGTCAGATAAAGAAATCAGTCGGATCAACGTCATTCAATCAGTTGTTGAAAAACGTATGCGCCGTCGTGATGCTGCTCATCAGCTTGCTTT
GACCGAACGTCAGACACAGCGGTTAATGAACCGCTTTCGTGAGTCTGGTGCCGCAGGATTGGTAAACCTTCGGCGTGGACGCCCTGGTAATCACAGGCTT
CCTGAGTCACTGAAGCTGCGAGTTCTTTCGTTACTTCACGATCATTACAGCGACTTTGGACCAACACTGGCCGCAGAAAAATTACGCGAACGCCACAACA
TCACAGTATCTGTTGAAACGCTCAGAAAATGGATGACAGCGGATGGACTCTGGGTTCCTTATTCACGTCGCAGGCCCCGCGTTCATCAACCCAGATATCG
GCGTGACTGCCTCGGAGAACTTGTTCAGATTGATGGTTCCCCGCACGACTGGTTTGAAGGCCGTGCACCGAAATGCTGCCTGCTCGTCTTTATTGATGAC
GCGACTGGCCGCCTGATGCACCTCCGTTTTGGTGAGACTGAATCAGCTTTTGATTACATGATGGCCACTCGCGAGTATCTCGAGCAACACGGCAAGCCCC
TTGCGTTCTACAGCGATAAGCACGGCATTTTCAGGGTCAATAATGGAGGATCCACTACGACCGGAGTCACCCAGTTTGGCCGTGTACTTTCTGAACTTGG
GATCGAGTTGATTTGTGCCAACAGTCCACAGGCTAAAGGCCGTGTGGAGCGAGCAAATCAGACACTTCAGGATCGGCTTATCAAAGAGATGCGTCTCGAG
GGAATCTGCAGTATTGAAGCCGCCAACGCCTGGCTGGATACCTTCATCGCTGACTTCAATCGTCGCTTCGCAAGACCAGCAAAATACCCCAAAGATCTGC
ACCGCCCGGTGTCTGAAAGCAACGAAGAGCTGGATGATATCTTTGCTTGGCAGGAACTGCGTAAGCTGTCTAAAACGCTGACATTCCGCTATGACAAAAT
GATATATCTGGTTGAACCTACTGAAGAAAATACTCGCATCGCTGGCGAGAAAATAACTGTCTACGACTATCCTGACGGCACGCTGGCATTCAAATACGGT
TACCGTTCACTCAAATATCAGGTGTTCGACAAACTGGAATGTCTCGACCAGGGGCAAATTGTTGATAACAAACGTCTTGGGGCTGTACTGAAGCTGGCGC
AAAGCAAAATGGATGAACTCGAACGCGATGGCAAGCGTGACAGGAGCAAAAAGATGCCAAAACGACGGGCTCAGGCCAGAGTTCAGGAGCAACTCAGGGC
AATTAATCCGGTCCTGGTAAACCCGGATGAATTCAGGGCCAGCCTGAAACGCTAGCCCCCTGCTCTTTTTTTTGGATAGTTCAGCTGTGGCAGTGTGATG
AAGTACAAGCTTTTGAAAACATGGCAGTTGAGTTTGCAACCAATAATCCCCATTACTTATCTGGTTTTACTATCACAGCAGATATATTCCAGAATATTAA
GGGGAAAACAGAACATGGCCAGATGTACGGCTCCTGTACGTGGACATAGCTCAGCAGCCGCCGCTGCTGCCTGTCCAGCCTGTCGCAATCGCAGTGGTTA
TCGCCGCAGCAGCTACAGTTATGATAGTTATCCGTCCTACTCCTCGTCAGGCAGCGCTGGCGGAAGTCGTGGAAGCAGTAGCGGTGGTTCCAGCAGCGGT
ACAAAGCCTCGCTGGTCAAAATCGGGATCTTCCGTTTCCTACACAACCGCCCAAGTACAATCTCTCACACCGATTCGCCAAACGGTAGAGAAGCTTGTCG
CAGAGAAGCCGGATTTGCGTGATGTATTCCTTTGCCACGCTTGGGATGATCGACAAGGCGTAGCCAAAGAGCTACACGATTTGCTCGAGGCTGCAGGCGT
CAAAGTATGGTTTAGCGAAAAGGATCTTGCTCTTGGCGTTCCTATGATGCGTGCCATCGATAAAGGATTAGCAAATTCTCGAATCGGTCTGGTATTAGTG
ACTCCAGCGCTATTAAACCGACTGCCCAAAGAAGGCGTTGCTGATAAAGAGCTTTCAGCTTTACTGGCCGGGAACCAACTCGTACCGATCGTTCATAACA
CAACGTATGAAGCTCTCCGCAATGTCAGTCCCTTGCTCGCATCCCGAAGCGGTCTGGACACGGGAGAAGATACGCTGGCAGTTGTCGCAACAAAAATTGC
AGAATTGATTACTGTGTAGAGTAACGACTCCCACTCAAACTAAAATATCTGGTCTACTACCGCAGGCCAGATATTTTACCTTTTATCACCTCTCCCTTCA
GAACATAACTTCCGCCCATGTCCATGTCACTTCAGGTGACATTTGAAACTGGCTAAACCGAGTGACTTTTTAATCTTGTAATAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1359 bp452 aa971455+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVTMSDKEISRINVIQSVVEKRMRRRDAAHQLALTERQTQRLMNRFRESGAAGLVNLRRGRPGNHRLPESLKLRVLSLLHDHYSDFGPTLAAEKLRERH
NITVSVETLRKWMTADGLWVPYSRRRPRVHQPRYRRDCLGELVQIDGSPHDWFEGRAPKCCLLVFIDDATGRLMHLRFGETESAFDYMMATREYLEQHGK
PLAFYSDKHGIFRVNNGGSTTTGVTQFGRVLSELGIELICANSPQAKGRVERANQTLQDRLIKEMRLEGICSIEAANAWLDTFIADFNRRFARPAKYPKD
LHRPVSESNEELDDIFAWQELRKLSKTLTFRYDKMIYLVEPTEENTRIAGEKITVYDYPDGTLAFKYGYRSLKYQVFDKLECLDQGQIVDNKRLGAVLKL
AQSKMDELERDGKRDRSKKMPKRRAQARVQEQLRAINPVLVNPDEFRASLKR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
705 bp234 aa16152319+No
ORF function : Passenger Gene
Annotation : TIR domain proteinDescription :

ORF sequence :

MARCTAPVRGHSSAAAAAACPACRNRSGYRRSSYSYDSYPSYSSSGSAGGSRGSSSGGSSSGTKPRWSKSGSSVSYTTAQVQSLTPIRQTVEKLVAEKPD
LRDVFLCHAWDDRQGVAKELHDLLEAAGVKVWFSEKDLALGVPMMRAIDKGLANSRIGLVLVTPALLNRLPKEGVADKELSALLAGNQLVPIVHNTTYEA
LRNVSPLLASRSGLDTGEDTLAVVATKIAELITV

 

Blast result :
Comments
ISKpn63 is 87% aa (transposase) similar to ISLad2.
References
1] Patricia Siguier (2020) Direct submission.
2] Liu,Y.(2016) Direct GenBank submission.