ISNam1

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
VITQ01000004 ND Nitrospirillum amazonense
Nitrospirillum amazonense BR 11145
DNA section
IS Length : 1512 bp

Ends


IR Length : 18/29

IRL : TGTAGGCGCAAAGTTAAAATGTCAGGCCTGTGCAAAGTAGAACTGTCAGT
IRR : TGTTTCAACCGGATAGAAGTGTCAGGGTATCCCGCAAAGTAGAACTGTCA

Insertion site


Left flankDirect repeatRight flankDR Length
ATAGATTATCGGTTTTTCGTATGTAGGCGGGGTGGACTCA5

DNA sequence

TGTAGGCGCAAAGTTAAAATGTCAGGCCTGTGCAAAGTAGAACTGTCAGTCTTCCGGTTGGCTGTGTCCGACGTGGGAGGCTGCGGTGGGCTGGGTCGTG
ATGAGCGAACGGGATGTTCGTCGGGTTGAGGTGCTGTCGGATGTTGTGGGCGGCCGGCTGACGGTGTCGTCAGCGGCGGCTGTTCTGGGCTTGAGCGAGC
GTCAGGTATGGCGGTTGCTGGGCCGGTATCGGTCAGGCGGCGGTGGTGCCATCGTGCACCAGGCGCGAGGGCGGCCGTCGAACCGTCAGTTGGGTGCTGG
GTTGCGCGAGTTGGCGCTGGAGCTGGTGCGGCGGCATTACGCGGATTTTGGTCCGACGCTGGCGGCGGAGCAGTTGGCGGAGCGTCATGGCCTGGTGGTG
TCGCGGGAGACGCTGCGGGGGTGGATGTCCGCGGCGGGGTTGTGGGTGTCGCGGCATCAGCGACGTCAGTTCCACCGCCCTCGCCTGCGTCGAGAATGCC
TGGGGGAACTGATACAGATCGATGGCAGTGAGCACCGGTGGTTTGAGGACCGGGCGGGGCCGTGCAGCTTGCTTGTGTTCATCGATGACGCGAGGGGTCG
GCTGATGCAGTTGCGGTTTGTGGCGTCGGAGAGCGCGTTCAGCTACTTCGCGGCATTGGAGGGGTACCTGGTTCGGCACGGTCGGCCCCTGGCGTTTTAT
TCCAACAAGCACACGGTTTTCCGGGTGGCGAAGACGGAGGCACGGACAGGGCAAGGCCTGACGCAGTTCGGGCGGGCCATGGCGGAACTGGGGATCGAGG
TTTTGTGCGCGAACTCCAGCCAGGCGAAGGGCCGGGTTGAGCGGGTGAACCGGACGCTGCAGGATAGGCTGGTGAAGGAACTGCGACTGGCGGGGATCGG
CGACATGGCGGCTGGCAATGCTTTCCTGGAAGGGTTCATGGAACGCTTCAATGCCCAGTTTGCCGTGGTCCCTGCGCGGCCGGAGGATGTGCACCGTCCG
CTGACGGTGTCGGCTGAGCGGTTGGGGGACATCCTGTGCTGGCGGGAGCGGCGGTATGTGGGGCGGCAGCTGACGCTGTCGTATGAGCGCCGGCGTGTGA
TGCTGGAAGAGACGGCGGTGACGCGGGGGTTGGTGGGGCAGTATGTGGACAGCTACGCCTTTGCCGACGGGCGGGTGGAGTTCCGCTGGCAGGGCGTTGC
CCTGCCCTACACCGAGTTCGACAAGACCCAGCGGGTGAGCCACGCGGCGGTGGTTGAGAATAAGCGGCTGTCGGCGGTGCTGGCCGAGATCCGGGAGACG
CAGGACGCGATGCCGGCACCGACGGTCCAGACCAACAGCGAGCGCGTTGGTTACGTCAAGACCGGGGGCAAACCGGGGCGCAAGCGGGGGTTGCCGGGGC
GCCTTGCGGGGGTAGGCCGGTCCGCTCCGCCTCCGGCTCCGCTGCCCGCCCTACCCCCGCACTGACAGTTCTACTTTGCGGGATACCCTGACACTTCTAT
CCGGTTGAAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1380 bp459 aa861465+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGWVVMSERDVRRVEVLSDVVGGRLTVSSAAAVLGLSERQVWRLLGRYRSGGGGAIVHQARGRPSNRQLGAGLRELALELVRRHYADFGPTLAAEQLAER
HGLVVSRETLRGWMSAAGLWVSRHQRRQFHRPRLRRECLGELIQIDGSEHRWFEDRAGPCSLLVFIDDARGRLMQLRFVASESAFSYFAALEGYLVRHGR
PLAFYSNKHTVFRVAKTEARTGQGLTQFGRAMAELGIEVLCANSSQAKGRVERVNRTLQDRLVKELRLAGIGDMAAGNAFLEGFMERFNAQFAVVPARPE
DVHRPLTVSAERLGDILCWRERRYVGRQLTLSYERRRVMLEETAVTRGLVGQYVDSYAFADGRVEFRWQGVALPYTEFDKTQRVSHAAVVENKRLSAVLA
EIRETQDAMPAPTVQTNSERVGYVKTGGKPGRKRGLPGRLAGVGRSAPPPAPLPALPPH

 

Blast result :
Comments
ISNam1 is 81% aa similar to ISRel26.
References
1] Patricia Siguier (2020) Direct submission.
2] Whitman,W. (2019) Direct GenBank submission.