ISNba1

  • Family IS1202
  • Group IS1202
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DPKP01000014 ND Nomurabacteria bacterium
Nomurabacteria bacterium isolate UBA12408
Candidatus Nomurabacteria bacterium isolate UBA12408
DNA section
IS Length : 1892 bp

Ends


IR Length : 12/14

IRL : TGTCAATGCTTTTTGTGCAGATTCTTTTTATCGTCTGATTCGTTTGTGAT
IRR : TGTCAAGCATTTTCGAAAATGTCCCAAAATAACTAAAACATTAGCACCAA

Insertion site


Left flankDirect repeatRight flankDR Length
ACGCTTAAAGCTTTACTCTTTTTTTAAATTCCTT0

DNA sequence

TGTCAATGCTTTTTGTGCAGATTCTTTTTATCGTCTGATTCGTTTGTGATAATGTCTTAATATACCACACAGGATTATGTCCTAAATGTTATATAGTAGA
CCTCATAAAATAAAGATGAGGTGATACTAATGAGAAAGGTAGATTTAACCATGAATGAACAAAAGAAATACGAAGTAATCAAAAGGCTAGTTGATACTAA
CGGCAATAAGAAGCGAGCGGCTATTGAGCTAAGCTGTACAATAAGGCATATTAATCGTATGATTCAAGGCTATATGAAGGAAGGAAAGGAATACTTTAGT
CACGGAAATAAAGGACGAAAACCTGTGAATGCTTTCTCCGAAAATTTTTATAGAAAAATTGTTGATTTATATCTTACAAAATACTGGGATGCTAACTTTA
CACACTATTCGGAGCTTCTTGCTAAGCATGAAGGTATAATAGCTTCTAGCAGTACTGTAGAGACCATCCTTAAGGCAGAAAACATAATATCTCCTAGGGC
TAGACGTTCAACTAGAAAAAATCTTAAAAAGAAACTTGAAGTGCTTAAAGAACAAGCTACTTCTCAAAAAGAAATCATACGTATTGAGGAAAATATTTTG
GATCTAGAAGATGCTCATCCAAGAAGACCTAGGTGTTCAAATTTTGGTGAAATGCTTCAAATGGATGCATCTATTCATCTATGGTTCGGTTCAGAAAAAA
CTCAGCTTCATATAGCTGTAGATGATTCGACCGGAATGATTGTAGGAGCTTTCTTTGATACTCAAGAGACTTTAAAAGGATATTATAATATATTGCACCA
AATTCTTATCAACCATGGTATCCCATATATGTTTTTTACTGATAGGAGAACCGTCTTTGAGTATAAACAAAAAAAGTCTCCCTCCGTAGAAGAAGATACC
TTTACTCAGTTTAGTTACGCTTGCAACCAACTTGGTATCGAAATTAGAACTAGTAGTGTTCCTCAAGCAAAAGGTCGCGTAGAGCGAATGTTCCAGACGT
TACAGTCACGCCTGCCGCTTGAATTACGATTGGCAGGCATAACCACCATTGAACAGGCTAATGAATTCTTGAACTCCTACGTAAAAGAATTCAACGCAAT
GTTTGCCCTGCCTGTTAATGATATCAACTCCGTTTTCGAAAAGCAACCAGATAATGAAAAAATCAATTTAACCTTAGCAATTCTAACAGATAGAAAAATT
GATAACGGTCATTCTATTAGATTCGAAAATAAATACTACAAGCTTTTGGATCCTAATAGCTGTCCCGTATATTACCACAAAGGAACTTCTTGCATGGTAA
TTCGGGCTTTTGACGGTCAATTGTTTTCATGTGTTGGTGAAAAGGTTTATTCTCTAGAAGAAATACCTAAGCATGAGGTTAAATCAAAGAATTTTGACTT
TTCTAAAACAGAGACAAAACCTATTAAACGTTATATTCCACCTATGAGTCATCCTTGGAAGAAAGCATCTTTTGATGCTTTCTTAAGAAAACAGGCTCAT
AGACAAGAAAACGTTGCGTAGTGTCCAAAAACACTAGATTCTAAATGTTCTTAAAGCAAAAGCTTTTAAGGCTTATTAAGGTTATCCTAATTTCGCTTAT
GCAATTGCTTCACTAGACACACACAAAGCCAAGCAAAAAAATTTTTAAGTGCGGTTTACAATGAGTGGGACCCGTGTGATAGCCTATTTCAGGCAAAGAC
GCCTTCCCTTTGTTCATACCCGTTAGGAATCCTTCGGGAGGGTGGCTTCGCCTGCGGCTTGGAAATCACATGGGAGAGGCTCGGTGTAAACTGGATTCTT
GAAAATCTTTTTGCACTTAATACAAAAAAAGCACCAAGAAAATTGGTGCTAATGTTTTAGTTATTTTGGGACATTTTCGAAAATGCTTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1371 bp456 aa1511521+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNEQKKYEVIKRLVDTNGNKKRAAIELSCTIRHINRMIQGYMKEGKEYFSHGNKGRKPVNAFSENFYRKIVDLYLTKYWDANFTHYSELLAKHEGIIASS
STVETILKAENIISPRARRSTRKNLKKKLEVLKEQATSQKEIIRIEENILDLEDAHPRRPRCSNFGEMLQMDASIHLWFGSEKTQLHIAVDDSTGMIVGA
FFDTQETLKGYYNILHQILINHGIPYMFFTDRRTVFEYKQKKSPSVEEDTFTQFSYACNQLGIEIRTSSVPQAKGRVERMFQTLQSRLPLELRLAGITTI
EQANEFLNSYVKEFNAMFALPVNDINSVFEKQPDNEKINLTLAILTDRKIDNGHSIRFENKYYKLLDPNSCPVYYHKGTSCMVIRAFDGQLFSCVGEKVY
SLEEIPKHEVKSKNFDFSKTETKPIKRYIPPMSHPWKKASFDAFLRKQAHRQENVA

 

Blast result :
Comments
ISNba1 is 81% aa similar to ISClsp8.
References
1] Patricia Siguier (2020) Direct submission.
2] Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A., Chaumeil,P.A. and Hugenholtz,P. (2018) Nat. Biotechnol.