ISNiba1
- Family IS1202
- Group ISTde1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| MHDW01000222 | ND | Nitrospirae bacterium | Nitrospirae bacterium GWC2_42_7 |
DNA section
IS Length : 1521 bp
Ends
IR Length : 42/48
IRL : TGTAATACCACAATAGAAATGTCCGCTTTTACCACAACAGAAATGTCCTA
IRR : TGTAGTACCACAATAGAAATGTCCTATTCTTACCACAATAGGAATGTCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AATATTTTTTAAC | AAAAAAGTTCTTGACATTG | 0 |
DNA sequence
TGTAATACCACAATAGAAATGTCCGCTTTTACCACAACAGAAATGTCCTAAACCAAGAGATGCTAAACTGCCCCTTTTTAAAAGGAGGCAGGATGGCAGG
AAAGGACATATTCGAGATGAGTCAGAGGGAGTTAAAGCGACTGCATGTAATCCACAACGTGCTTGAGAGAGAGTTAAAACAGGCAGATGCAGCAGAGGTA
CTTTCCTTAAGTGACCGGCAGATAAGGCGGATAATTAAGCAAGTAAGGAAAGAAGGCGATAGCGGGGTAATCAACAAAGCCAGGGGGAAGCCCTCTAATA
GTAGTCTGCCCAAAAAGATAAAGGACAAAGCGATAGAGCTATACCGCAAGAAGTATGAAGGCTTTGGACCGACACTGGCATCAGAGAAGCTTTTAGAGCT
GGATGGGCTAAGCGTCAATGATGAAACCTTAAGAAGATGGCTGGTAAGCTCAGGGGACTGGGAGAGGGCAAGGAAGAGCAGGAAACATCGACAGTGGAGG
CCTCGAAGACCTTGTTTTGGGGAGATGGTACAGATAGATGGCTCTCATCATGACTGGTTTGAGGGCAGAGGACCGAAATGTGTGCTTATGGGATACATAG
ACGATGCCACAGGGAAAGTATATGCAAGGTTCTATGACTATGAAGGCACGATTCCGGCAATGGACAGCTTTAAAAGGTATTCAAAAAAATACGGCATACC
TGCAAGCGTGTATCTTGATAAGCATACGACATATAAATCCCCCGGGAAAAAGACTTTAATGTATGATGAAGAGCTTTTAAGTCAATTTCAGAGGTCTATG
AAGGAACTTGAGGTAAAGGTCAAACATGCGCATTCACCGCAGGCAAAAGGCAGGATAGAGAGGCTGTTCAGGACATTTCAGGACAGGGTTGTAAAGGAGA
TGAGATTAGAGGGGATAAAAACAGTGGAGGAGGCAAACAGGTTTTTAACTGGATACCTGCCGAAATACAACAGAAAATTTACGGTAAAACCAAACGAGAA
AGCGGATCTCCACCGTCCTGTACCGAAGGGACTGAATCTGGACAGCATCCTATGCATTAAAGAAGAAAGGGTATTAAGGAACGACTTTACCATTGCATAC
GAAGGGAAACTTTATCAGATCACAGACAATGTAAAAGCTGATAAGGTCATTGTACAAGAGAGAATAAACGGGACGATGGCAATAACACATGAGGGAACGA
TCTTGAAGTTCAAAGAGATAACTGAAAGACCTGAAAAATTAAAGAAGCCGCCTCGTATTAGCAGAAAGAAAAAGCCATGCAAGCCTTCCGTAGAACACCC
GTGGAGGAAATTCAACATCAACGGATGGAAGAAAAAGAAGTGGACGCAGGCTGCATAAATATGGATACCAAGATATGGGTTTGTTTTTGAAAACCGATTT
TAGGGCATTTAACGAAGCCCTATTTTTCCAAAAAAGTCAGTTATGAAAGAAAATCAGGTAAAATACATAACCAGACATTCCTATTGTGGTAAGAATAGGA
CATTTCTATTGTGGTACTACA
AAAGGACATATTCGAGATGAGTCAGAGGGAGTTAAAGCGACTGCATGTAATCCACAACGTGCTTGAGAGAGAGTTAAAACAGGCAGATGCAGCAGAGGTA
CTTTCCTTAAGTGACCGGCAGATAAGGCGGATAATTAAGCAAGTAAGGAAAGAAGGCGATAGCGGGGTAATCAACAAAGCCAGGGGGAAGCCCTCTAATA
GTAGTCTGCCCAAAAAGATAAAGGACAAAGCGATAGAGCTATACCGCAAGAAGTATGAAGGCTTTGGACCGACACTGGCATCAGAGAAGCTTTTAGAGCT
GGATGGGCTAAGCGTCAATGATGAAACCTTAAGAAGATGGCTGGTAAGCTCAGGGGACTGGGAGAGGGCAAGGAAGAGCAGGAAACATCGACAGTGGAGG
CCTCGAAGACCTTGTTTTGGGGAGATGGTACAGATAGATGGCTCTCATCATGACTGGTTTGAGGGCAGAGGACCGAAATGTGTGCTTATGGGATACATAG
ACGATGCCACAGGGAAAGTATATGCAAGGTTCTATGACTATGAAGGCACGATTCCGGCAATGGACAGCTTTAAAAGGTATTCAAAAAAATACGGCATACC
TGCAAGCGTGTATCTTGATAAGCATACGACATATAAATCCCCCGGGAAAAAGACTTTAATGTATGATGAAGAGCTTTTAAGTCAATTTCAGAGGTCTATG
AAGGAACTTGAGGTAAAGGTCAAACATGCGCATTCACCGCAGGCAAAAGGCAGGATAGAGAGGCTGTTCAGGACATTTCAGGACAGGGTTGTAAAGGAGA
TGAGATTAGAGGGGATAAAAACAGTGGAGGAGGCAAACAGGTTTTTAACTGGATACCTGCCGAAATACAACAGAAAATTTACGGTAAAACCAAACGAGAA
AGCGGATCTCCACCGTCCTGTACCGAAGGGACTGAATCTGGACAGCATCCTATGCATTAAAGAAGAAAGGGTATTAAGGAACGACTTTACCATTGCATAC
GAAGGGAAACTTTATCAGATCACAGACAATGTAAAAGCTGATAAGGTCATTGTACAAGAGAGAATAAACGGGACGATGGCAATAACACATGAGGGAACGA
TCTTGAAGTTCAAAGAGATAACTGAAAGACCTGAAAAATTAAAGAAGCCGCCTCGTATTAGCAGAAAGAAAAAGCCATGCAAGCCTTCCGTAGAACACCC
GTGGAGGAAATTCAACATCAACGGATGGAAGAAAAAGAAGTGGACGCAGGCTGCATAAATATGGATACCAAGATATGGGTTTGTTTTTGAAAACCGATTT
TAGGGCATTTAACGAAGCCCTATTTTTCCAAAAAAGTCAGTTATGAAAGAAAATCAGGTAAAATACATAACCAGACATTCCTATTGTGGTAAGAATAGGA
CATTTCTATTGTGGTACTACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1266 bp | 421 aa | 93 | 1358 | + | No |
Chemistry : DDE
ORF sequence :
MAGKDIFEMSQRELKRLHVIHNVLERELKQADAAEVLSLSDRQIRRIIKQVRKEGDSGVINKARGKPSNSSLPKKIKDKAIELYRKKYEGFGPTLASEKL
LELDGLSVNDETLRRWLVSSGDWERARKSRKHRQWRPRRPCFGEMVQIDGSHHDWFEGRGPKCVLMGYIDDATGKVYARFYDYEGTIPAMDSFKRYSKKY
GIPASVYLDKHTTYKSPGKKTLMYDEELLSQFQRSMKELEVKVKHAHSPQAKGRIERLFRTFQDRVVKEMRLEGIKTVEEANRFLTGYLPKYNRKFTVKP
NEKADLHRPVPKGLNLDSILCIKEERVLRNDFTIAYEGKLYQITDNVKADKVIVQERINGTMAITHEGTILKFKEITERPEKLKKPPRISRKKKPCKPSV
EHPWRKFNINGWKKKKWTQAA
LELDGLSVNDETLRRWLVSSGDWERARKSRKHRQWRPRRPCFGEMVQIDGSHHDWFEGRGPKCVLMGYIDDATGKVYARFYDYEGTIPAMDSFKRYSKKY
GIPASVYLDKHTTYKSPGKKTLMYDEELLSQFQRSMKELEVKVKHAHSPQAKGRIERLFRTFQDRVVKEMRLEGIKTVEEANRFLTGYLPKYNRKFTVKP
NEKADLHRPVPKGLNLDSILCIKEERVLRNDFTIAYEGKLYQITDNVKADKVIVQERINGTMAITHEGTILKFKEITERPEKLKKPPRISRKKKPCKPSV
EHPWRKFNINGWKKKKWTQAA
Blast result :
Comments
ISNiba1 is 77% aa similar to ISOmba1.
References
1] Patricia Siguier (2020) Direct submission.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. ( 2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. ( 2016) Nat Commun 7, 13219.