ISNiba3

  • Family IS1202
  • Group ISTde1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DSMQ01000024 ND Nitrospirae bacterium
Nitrospirae bacterium isolate SpSt-298
DNA section
IS Length : 1507 bp

Ends


IR Length : 28/35

IRL : TGTTAAAGGTTATTACTATTTTGAAATGTTAAATTTTTTGGTAGCCTCGT
IRR : TGTTAAATTTTTACTAATTTAAAATGTTAATTTATGAACTGAACAACTCC

Insertion site


Left flankDirect repeatRight flankDR Length
GATGTTACTATTTTGAAATATTGAGTTAGTAATAAC0

DNA sequence

TGTTAAAGGTTATTACTATTTTGAAATGTTAAATTTTTTGGTAGCCTCGTAGCGATTCTAAAACTTAAAAGGAGGCTACCATGAAAGAACAGAAGGTATT
AGTTACGGTGAAAGATATACAAAGATACAAGGTACTAAAAGATGTTATTGAGAAGAGATTAAAGGGTTTTGAGGCAGCTCAAATACTTAACCTCAGTTAT
GTCCATATCTCAAGGCTTAAGGCGAGGCTCTTGAGAGAGGGTTTTATAAGCCTCTTAAGAAAAACCCCTCCTTCTCCCCCGAATAAAAAGATAACAACCG
CAATGACTGACGAAATCCTCAGGCTCCATAGAGAGTTTTATTATGACTTCAATATCATGCACTTTAAGGATAAATTAGAAGAAGACCATAATATTCGCTT
GTGCTATGAATCTTTAAGGAGAACCCTTATAAAGGCCCAAGAACACTCTCCGAGAAAGAAGAGAGTAATCCACAGACAGCGTCGCAGGATGCCTAAGGCA
GGTATGCTTGTGCAGATGGACTCATCTCAGCATAGGTGGCTTGAAGGTATACCTGAGAAATGGTGGCTTGTAGCAATGATTGATGATGCCACTAACGAGG
TTCCTTATGCCAGATTCTTCCCTAAAGACACACTCTTTGCTAATATGCATGTAATCAGGCGCTTTATTGAAATGAAAGGCTTATTCATGAGTCTTTATGC
AGATAAGGCAAGTCATTTCAAAACTACAAGGCATGGAGGGTTGCATTATAGCGTCAACCATGAGCATGATGATACACAGATTGAGAGGGCATTGGAAGAG
TTGGGAGTCACCCTTATACCAGCCAACTCTCCACAGGCAAAGGGTCGGATAGAGGTAACATTCAGATTATTTCAGGATCGCTTCATTAAAGAGATGCGGC
TTGCTCAGATCAAAGACTATGATGAGGCGAATAGATTCCTTCTTGAGAGGTTCCTACCCTGGTATAACGCTAAATATACCCATTCTGCTGAAAGTTCCTA
TATGCCTTTACCAAAAGAGAAGGATCTGGATCTGATCTTCTGCATCAAGAAAGAACGGACAGTTAATAATGACAATACTGTTAGCTTCAACGGTCAGGTT
ATTCAAATACCACCTACAGATACAAAACTTTCCTTTGCCGGGGCAAGGGTTGATGTGTGTTTATTGGAGGACCGGAGGATCTTTATACTTTACAAAGACA
GGATCATTGCTAAGGCTATTTTGTCTGAGGATAATAAAACACTTAAAAGGGAGAAGGAGATAGAGGGATTGCTCAATAAAAGAGGATATGTTGCTGTTAA
AACCTCTTCAGTTAAAAGGAGGGAGGGAAAGATTGCCTATATACCTCCTGCAAATCATCCATGGAGAAAGGCATTAGCTAAGGAGATTAGATCAAAACAG
ATCAGAAAAACCAAGATAGAAAAAGAGGCTCAAAGAGAAATTGAAAAACTATTTGGAGGAGTTGTTCAGTTCATAAATTAACATTTTAAATTAGTAAAAA
TTTAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1401 bp466 aa811481+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKEQKVLVTVKDIQRYKVLKDVIEKRLKGFEAAQILNLSYVHISRLKARLLREGFISLLRKTPPSPPNKKITTAMTDEILRLHREFYYDFNIMHFKDKLE
EDHNIRLCYESLRRTLIKAQEHSPRKKRVIHRQRRRMPKAGMLVQMDSSQHRWLEGIPEKWWLVAMIDDATNEVPYARFFPKDTLFANMHVIRRFIEMKG
LFMSLYADKASHFKTTRHGGLHYSVNHEHDDTQIERALEELGVTLIPANSPQAKGRIEVTFRLFQDRFIKEMRLAQIKDYDEANRFLLERFLPWYNAKYT
HSAESSYMPLPKEKDLDLIFCIKKERTVNNDNTVSFNGQVIQIPPTDTKLSFAGARVDVCLLEDRRIFILYKDRIIAKAILSEDNKTLKREKEIEGLLNK
RGYVAVKTSSVKRREGKIAYIPPANHPWRKALAKEIRSKQIRKTKIEKEAQREIEKLFGGVVQFIN

 

Blast result :
Comments
ISNiba3 is 50% aa similar to ISTgr1.
References
1] Patricia Siguier (2020) Direct submission.
2] Zhou,Z., Liu,Y., Xu,W., Pan,J., Luo,Z.H. and Li,M.(2020) mSystems 5 (1), e00795-19 .