ISNitsp1

  • Family IS1202
  • Group ISTde1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NEWS02000001 ND Nitrospira sp.
Nitrospira sp. CG24B
DNA section
IS Length : 1415 bp

Ends


IR Length : 22/30

IRL : TGTAATCCCACAATGATAATGTCCGGTTTCACCACGATAGAAATGTCCTG
IRR : TGTCAACCCAATTTAGAAATGTCCGCTTTCTCCCAACATAGAAATGTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CCTTCTAACCCCACGCGATTGCTCGCTTCATCTGACTGTCCTGCAATTT17

DNA sequence

TGTAATCCCACAATGATAATGTCCGGTTTCACCACGATAGAAATGTCCTGTTCATTGTTAGACTGCCAGTTCTCAGAAGGAGGGCTGGATGGTCGGAGAG
GACAGGGTCACGATGAGTGGGAAAGAATTGCGGCGGGTGCATGTGATTCGACAAGTGCTGGACCGGAAGCTGACGCAGGTGAAGGCCGCGACGGTGTTGG
GGCTGTCGCCGCGTCAGGTCCGGCGGTTGGTGACACGGGTGCGCCAGGAAGGCGACGGCGGATTGGTGCATCGAGGGCGCGGCCAGCCCTCGAATCGGCG
AATCCCTGAGGGGCACAAGACGAAGATCCTCCGGCTCTATGAGACGCGCTATGGGGACTTTGGGCCGACGTTGGCCGTGGAGAAATTGGCGGAACGGCAT
GGGCGCACACTCAGTGATGAAACGCTGCGACGCTGGTTACGGGAGCGAGGGATTGATCATTTTGTACGCCGGAAACGACCCCATCGGGCGTGGCGGGTCC
GCAAGGCCCATGTCGGCGAGTTGGTCCAGCTCGATGGCTCGCACCATGACTGGTTTGAAGGGCGCGGCCCGGCGTGCGTCTTGATGGCCTACATCGACGA
TGCGAGCAGTCGCGTCTTTGCGCGGTTCTACAAGTACGAGGGCACGATCCCGGCGATGGACAGCTTCTGGCAGTATCTCCAGCAGTATGGGCTGCCGCTG
GCTATCTATGCAGACAAGCACACGACCTACCAGTCGTCGGCCGAACCCACGCTTGAGGAGCAGCTTGCGGGGGTAGCACCAACAAGTCAGTTTGGGCGGG
CGCTTCACGAGTTGGGGGTGGCGCTGATCGCGGCGCACTCGCCACAGGCCAAGGGCCGAGTGGAGCGGCTGTTTCGCACTTTGCAGGATCGGCTGCTCAA
GGAGCTCCGGTTGGGAGGGATTGCGACGATCGAGGCGGCCAACCGATTCTTGGAGGAGTATCTGCCGGGCTACAACCGACGGTTTGCGGTCTTGCCCGCG
CAGCCGACCGATCTGCACCGGCCGTGTCCAGCTCGTGGAGCGCTGGATCGCATCCTGTGCATCAAGACGACGCGGGCCCTCCGGCACGATTGGACCGTGG
CCCACAACGGGCATCTCTATCAGGTGCACACTAACGTGCGAGCGAGGCAGGTGGTCATCGAAGACCGGCTCGATGGGACACTGCGCATGACGCATCGCGG
CCACATGCTCGCCTATCACCCGATCACCGAACGTCCGGTACGCCCAGCAGCCCCGCGGACCGTGTCACGCCGGCATCGACCGGTCATACAGGCGAGGACG
CATCCGTGGCGAAAACGGGTACTGCCGCCGCGAGACATCCTCGCGGCGGTGGGCAGCCCCTAACCCGGACATTTCTATGTTGGGAGAAAGCGGACATTTC
TAAATTGGGTTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1275 bp424 aa891363+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVGEDRVTMSGKELRRVHVIRQVLDRKLTQVKAATVLGLSPRQVRRLVTRVRQEGDGGLVHRGRGQPSNRRIPEGHKTKILRLYETRYGDFGPTLAVEKL
AERHGRTLSDETLRRWLRERGIDHFVRRKRPHRAWRVRKAHVGELVQLDGSHHDWFEGRGPACVLMAYIDDASSRVFARFYKYEGTIPAMDSFWQYLQQY
GLPLAIYADKHTTYQSSAEPTLEEQLAGVAPTSQFGRALHELGVALIAAHSPQAKGRVERLFRTLQDRLLKELRLGGIATIEAANRFLEEYLPGYNRRFA
VLPAQPTDLHRPCPARGALDRILCIKTTRALRHDWTVAHNGHLYQVHTNVRARQVVIEDRLDGTLRMTHRGHMLAYHPITERPVRPAAPRTVSRRHRPVI
QARTHPWRKRVLPPRDILAAVGSP

 

Blast result :
Comments
ISNitsp1 is 60% aa similar to ISKpn63.
References
1] Patricia Siguier (2020) Direct submission.
2] Palomo,A., Dechesne,A. and Smets,B.F. (2019) Direct GenBank submission.