ISNitsp2

  • Family IS1202
  • Group ISTde1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
SWDR01000019 ND Nitrospira sp.
Nitrospira sp. isolate RSF8
DNA section
IS Length : 1409 bp

Ends


IR Length : 38/49

IRL : TGTAATCCCAACATGAGAATGTCCGCTTTGACCAAAGTAGAAATGTCCTC
IRR : TGTCAACCCAATTTAGAAATGTCCGCTTTCTCCCCAAGTAGAAATGTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
GCCTAAGAAGGGCCGCCTGCACAGATCCTTTCATTGA0

DNA sequence

TGTAATCCCAACATGAGAATGTCCGCTTTGACCAAAGTAGAAATGTCCTCTTGTGTAGACTGGCCACCCTCAGAGGGAGGGCAGCATGGTCGGAGAGGAC
ACAGTGCGTATGAGCGTACAGGAGTTGAAGCGGGTGCATGTCATTCGGCAAGTGATGACCAAGGCGCTGCGGCAGCGAGAGGCTGGCGAGGTCTTGGGGC
TGACGACGCGCCAGGTCCGGCGACTGATCCAGCGAGTCCGAGCGGAGGGAGACGCGGGCCTCGTACATCGAAGTCGAGGCACGCCCTCACACCGACAGTA
CCGCCCCGCACTGAAGGCCCGGGCCCTTCGGCTGTACGCGAAGCACTACGGCGATTTTGGACCCACCCTTGCGGCGGAGAAGCTAGTCGAGCGGCACGGA
ATCTCCCTCAGCGCCGAAACCTTACGCGGCTGGCTGCGGGCCGCAGGCGTGACGCACTTTCAGCGGCGACAGCAACCGCATCGGGCGTGGAGGGCCCGGA
AAGCGCACCGGGGCGAGCTGGTCCAGCTGGACGGCTCGCATCATGACTGGTTCGAGGGACGTGGGCCCCGGTGTGTGCTCATGGCCTACATCGATGATGC
GAGCAGCCAAGTCTTTGCCCGGTTCTACGCCTATGAGGGCACGATCCCCGCGCTGGATAGCTTCCTACGCTATGTGAAGCAGAATGGGGTTCCGCTGGCC
GTCTATACCGATCAACATACGACCTACAAGTCGCCGGCCGTGCCGACCGTCGAGGAGCAATTAGCCGATCGCCAGCCGCACAGTCAATTTGAGCGGGCGC
TCGCCGAGTTGGGGGTGGCGGTGCTTCATGCCCACTCCCCGCAGGCCAAAGGCCGCGTCGAACGCTTGTTCAAGACGTTGCAGGATCGTCTGGTGAAAGA
CCTGCGTCTGGCAGGCCTCACGACCCTCGAGGCCGCCAATCAGTTCCTGGGAACCTGGCTGCCACGCTACAACAAACGCTTTGCGATTCCGCCGACACAG
CCTGCCGATCTCCATCGGCCCCGTCCGGCGTGCCGTGACCTGGAGCGGAGCCTCTGCCTCAAGACCACGCGCGTCCTGCGCCGCGATTGGACCGTAGCCC
ACCAGGGGCAGCTCTATCAGATCCGCGACAATATCCGAGCAACCCAGGTGCAGGTGGAAGAACGGATCGATGGGACGATGCGGATCACGCACCGTGGCCA
GCCGCTCACGTATCAGGCCATTGCCGCGCGGCCCCGCAAGCCGGCGGGGCTGGAGACACGCAGACTGCCGCAGCCGCCCGTCAAGCCCCGAGCAAATCAT
CCATGGAATGGCTATGGGACGATCGCCGCCAAGCGACCGGCCGCCGCACAATCCTAAACCGGACATTTCTACTTGGGGAGAAAGCGGACATTTCTAAATT
GGGTTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1272 bp423 aa861357+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVGEDTVRMSVQELKRVHVIRQVMTKALRQREAGEVLGLTTRQVRRLIQRVRAEGDAGLVHRSRGTPSHRQYRPALKARALRLYAKHYGDFGPTLAAEKL
VERHGISLSAETLRGWLRAAGVTHFQRRQQPHRAWRARKAHRGELVQLDGSHHDWFEGRGPRCVLMAYIDDASSQVFARFYAYEGTIPALDSFLRYVKQN
GVPLAVYTDQHTTYKSPAVPTVEEQLADRQPHSQFERALAELGVAVLHAHSPQAKGRVERLFKTLQDRLVKDLRLAGLTTLEAANQFLGTWLPRYNKRFA
IPPTQPADLHRPRPACRDLERSLCLKTTRVLRRDWTVAHQGQLYQIRDNIRATQVQVEERIDGTMRITHRGQPLTYQAIAARPRKPAGLETRRLPQPPVK
PRANHPWNGYGTIAAKRPAAAQS

 

Blast result :
Comments
ISNitsp2 is 77% aa similar to ISNitsp1.
References
1] Patricia Siguier (2020) Direct submission.
2] Palomo,A., Dechesne,A. and Smets,B.F. (2019) Direct GenBank submission.