ISNov4

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FWXL01000010 ND Novosphingobium sp.
Novosphingobium sp. B1
DNA section
IS Length : 1740 bp

Ends


IR Length : 31/43

IRL : TGTAGGCGCTAAGTAGAAATGACACTGCTCCGCTAGATAGAAAAGGCACA
IRR : TGTTGCTGCCACTTAGAGAAGACACATTCGTCGCCAGATAGAACTGACAC

Insertion site


Left flankDirect repeatRight flankDR Length
TTTCTTATCGATCTTGCGCGTTTGCGCTTGCAGATCATTTAC6

DNA sequence

TGTAGGCGCTAAGTAGAAATGACACTGCTCCGCTAGATAGAAAAGGCACACAGTGCCAGCGGGTCGCCGGTGTCATGGCCATCCTCGGCAGCGAGGATGT
GCGAACGATGACGGTGCTGACGATGAGTACTGCCGAGGTGAGCCGGTTCGACACCCTGATGCGGCTCGACCGCGGTGAGATCCGGGTTGCAGACGCGATG
GCGCTACTGAGCCTTGAGCGTCGACAGATCTACCGGTTGCTGGAGCGAGTTCGGCAGGACGGCGCAGCCGGGCTGATCTCGCGCAAGCGTGGCCGTCCGA
GCAACCGGCGTTACGGCGATGCCTTTCGTGACCAGGTCGTCAGCCTCGTGCGCGAGCAGTATAACGGGTTCGGGCCCACGCTGGCGCGCGAGTATCTGGC
CGAGCGGCACGGCATCCGGGTGTCGTGCGAGACGCTGCGGCAGATGATGATGGCAGCGGGGCTGTGGAAGGACCGCGCAGCGCGTCGCCCTCGCCCGCAC
CAGCCGCGTTACCGGCGGGACTGCCGCGGCGAGCTGATCCAGGTCGACGGGTCCAAACACTGGTGGTTCGAGGACCGGGGCCCGCAATGCACGCTGCTGG
TCTATATCGACGATGCGACCAGCGAATTGATGCACCTGGAGATGGTAGAGAGCGAGAGCACCTTCGCCTACATGCGGGCCACGCGGACGTATATCGAGCG
CCACGGAAAGCCGGTCGCCTTGTACTCCGACAAGCACAGCGCGTTTCGCAACAACACCGCTTCGGCGAACGGTGACGGCATGACCCATCTCGGGCGGGCG
CTGCATGCGCTCAACATCGAGATCATCTGCGCCAACTCGCCGCAGGCCAAGGGGCGTGTCGAGCGGGCGAACGGCACGTTGCAGGACCGGCTGGTCAAGG
CGATGCGACTGGAGGGCATCTCCACCATCGAGGAGGCCAATGCCTTTCTCCCCGCCTACATGGCCCGGCACAACCGGCAGTTCGCCAGGACGCCGTTCGA
CCCGCGCGATCTCCACCGCCCGCTGGCGCCGCACGAGAACATCGAGGCAGAGATGGTCTGGCGCGAGCAGCGCACGGTGACCGCGGCGCTGACGCTGCAC
TACAACAAGGCGCTGTTCATCCTGGAGCCGAACCGGGTCAGCCAGGCACTGGCGCGCAAGCGGGTAGATGTCTGCGAGTTCCCTGACGGGCGGATCGAGA
TCCGACACGACGGGCAGGCCTTGCCCTATCGCGTGTTCGACAAGATGCAGCGGGTGAACCAGGCAGCGGTGGTCGACAACAAGCATCTCGACGCGGCGCT
GGCGATGGCGCGGCTCCTGCAGGAAACGGCACCACACCACCGCAAGCGGAACAACAACGAGCCGGCGCGGACCGCCCAGACTGGCGGTATGTTCGCCGCC
TCGGCTGCTCCGACTGCATCGAAGGTGGATCGCCGCACGCTCTGCACGCCCAAGCTGAAGCGTGGACCGCGCCTTCCCAACACGGAACTCGTCGCGCGTG
GACTGGCCGAATACGCGGGCCGAGATCGGAACACGCCGCCTCAGGAACCTGCCTCACTGCCTGCTGTTCTAGCGTGACCGGGCCCGCTGCTGGCGCAGCG
GGTCCGTAGCCCTCTCAGAACTCACCGCATCAGCGGGGTCAGCGCTGCGCTTGTGGATGGCTCCACGCTGCCCCCGCTGCTACCAACGGTGTGTCAGTTC
TATCTGGCGACGAATGTGTCTTCTCTAAGTGGCAGCAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1470 bp489 aa1081577+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTVLTMSTAEVSRFDTLMRLDRGEIRVADAMALLSLERRQIYRLLERVRQDGAAGLISRKRGRPSNRRYGDAFRDQVVSLVREQYNGFGPTLAREYLAER
HGIRVSCETLRQMMMAAGLWKDRAARRPRPHQPRYRRDCRGELIQVDGSKHWWFEDRGPQCTLLVYIDDATSELMHLEMVESESTFAYMRATRTYIERHG
KPVALYSDKHSAFRNNTASANGDGMTHLGRALHALNIEIICANSPQAKGRVERANGTLQDRLVKAMRLEGISTIEEANAFLPAYMARHNRQFARTPFDPR
DLHRPLAPHENIEAEMVWREQRTVTAALTLHYNKALFILEPNRVSQALARKRVDVCEFPDGRIEIRHDGQALPYRVFDKMQRVNQAAVVDNKHLDAALAM
ARLLQETAPHHRKRNNNEPARTAQTGGMFAASAAPTASKVDRRTLCTPKLKRGPRLPNTELVARGLAEYAGRDRNTPPQEPASLPAVLA

 

Blast result :
Comments
ISNov4 is 82% aa similar to ISShsp5.
References
1] Patricia Siguier (2020) Direct submission.
2] DOE-JOINT GENOME INSTITUTE (2017) Direct GenBank submission.