ISNvsp1

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JAAIVB010000008 ND Noviherbaspirillum sp.
Noviherbaspirillum sp. 17J57-3
DNA section
IS Length : 1666 bp

Ends


IR Length : 16/25

IRL : TGTAGCGCCCGAATTAGAATGTCCCGAACGGGCCCAATCAGAATGTCCCG
IRR : TGTTGCAACCATTTTCAGATGTCCCACCTGCAGCCGTTTTCAAATGTCCC

Insertion site


Left flankDirect repeatRight flankDR Length
AATTATGCGTAATTTGCGTGTGGGAGCCATTT5

DNA sequence

TGTAGCGCCCGAATTAGAATGTCCCGAACGGGCCCAATCAGAATGTCCCGGTTGGCACAAATGATAGCCTGCCTGGCGACCTAGGCTGGAAGCTGTTCCC
ACAGCGATCCAGGAGACGCCATGGCCAGTTCCGGAGTCATCACCATGAGTATGCGCGAAGTCGACCGGCTCAAGACACTGCAGGCAGTGATCGACGGCAA
TCTTCGGGCAGCGACGGCTGCGCAGCGACTCGGGCTCACCAAACGCCAAGTCAACCGGCTTTTACAGCGGTACCGAGAACATGGCGTCGTTGGACTGGTG
AACCGACAGCGCGGTCAGCGTGGCCACCGGCAGCTGGCGTCAGGTCTGGCGCAGATGGCGCTGAACATTATCCGCGAACGGTACGCTGATTTTGGACCGA
CCTTGGCTTGCGAGAAGCTGCGTGAAGTGCACGGAATCGTTCTTGGTAAGGAAACGGTGCGCAGGCTGATGAGCGACGCTGGCCTCTGGATTCCTCGTGC
TCTGCGTTCTGGGTCGATCTATCAACCAAGGAACCGCCGCAACTGTGTTGGCGAGCTGATTCAGATCGACGGCAGCGACCATCGCTGGTTTGAGGACCGG
GCACCGGCCTGCACGCTTCTCGTTTATATCGACGACGCCACCAGTCGGTTGATGCACCTGCACTTTACGCCGTCGGAGTCCACGTTCAGTTATTACGAAG
CGACGCGGCGCTACATTGAACTGCATGGCAAACCACAGGCGTTCTACAGTGACCAGGCCAGCGTCTTCCGCTGCAACGCCAAACACGCGACCTCCGGGGA
TGGTCATACGCAGTTCGGACGCGCGCTTTATGAGCTCAACATCGAGAGCATTTGCGCCAACAGCAGCCAGGCCAAGGGGCGCGTAGAACGGGCCAATCTA
ACACTGCAGGACCGGCTGGTGAAGGAATTGCGATTGCAGGGCATCTCGTCGATGGAGGCCGCCAACGCGTATGCGCCCTCTTACGTCGCTGACCACAACA
AGCGCTTCGCCAAACCACCGCGCAACGACTGGGACGCGCATCGGCCACTGCTGCAAGGCGAAGACCTGAACACGATCTTTACCTGGCGCGAGCAACGCAA
GGTGTCGCACGTGCTGACGTTGCAATACGATAAGACGATCTATCTGATTGCAGACTCCAAGGCCAACCGCAAGCTGATTGGCAAGTACATCGATTTCTAT
GAATACCCGGACGGGCACATTGAAATCCGTGCCGCGGGCGTCGTGGTTCCGTATGAAACCTATGATCGCCTGCCACAAATTGATCAAGGTGCGATCGTGG
AGAACAAGCGGCTTGGACACGTACTGGAAGTGGTCGAGGCTGTGCAGCAACAGCGTGATGACCGGCGTAGTCGCGGCGATGTACCGGTACGGACGAACCG
CGGGCAGCCGTCATCCCGGGTGAAAGCAGCGGCGGGAAAGAAGCGGCAACGGCAGCTCGGTGCCGAGGATCTGGAACGGGCGCTCCATAGCAACTTGCTG
CATTGAATTGTACCGTCCGCCGCGATCTTGCTGGTGGTCGAGGTAGGGAAACCCTACCCTGCCCTTACGCCCATTCCGCTGTCGCGGCTGCTTGCTGGAA
ACCCCGATGCATAACCGGGACATTTGAAAACGGCTGCAGGTGGGACATCTGAAAATGGTTGCAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1386 bp461 aa1211506+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MASSGVITMSMREVDRLKTLQAVIDGNLRAATAAQRLGLTKRQVNRLLQRYREHGVVGLVNRQRGQRGHRQLASGLAQMALNIIRERYADFGPTLACEKL
REVHGIVLGKETVRRLMSDAGLWIPRALRSGSIYQPRNRRNCVGELIQIDGSDHRWFEDRAPACTLLVYIDDATSRLMHLHFTPSESTFSYYEATRRYIE
LHGKPQAFYSDQASVFRCNAKHATSGDGHTQFGRALYELNIESICANSSQAKGRVERANLTLQDRLVKELRLQGISSMEAANAYAPSYVADHNKRFAKPP
RNDWDAHRPLLQGEDLNTIFTWREQRKVSHVLTLQYDKTIYLIADSKANRKLIGKYIDFYEYPDGHIEIRAAGVVVPYETYDRLPQIDQGAIVENKRLGH
VLEVVEAVQQQRDDRRSRGDVPVRTNRGQPSSRVKAAAGKKRQRQLGAEDLERALHSNLLH

 

Blast result :
Comments
ISNvsp1 is 76% aa similar to ISPansp1.
References
1] Patricia Siguier (2020) Direct submission.
2] Kim,M.K.(2020) Direct GenBank submission.