ISVbsp5

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP045340 ND Vibrio sp.
Vibrio sp. THAF190c plasmid pTHAF190c_b
DNA section
IS Length : 1532 bp

Ends


IR Length : 20/28

IRL : TGTAAGAGCAATATAGTAATGTCCGGTTTGAGCAACTTTAAAATGTCCTC
IRR : TGTTAATTCAAGTTTGAAATGTCCTGTTGTCCACCCAGATTAAAATGTCC

Insertion site


Left flankDirect repeatRight flankDR Length
TATCTAATACGCAGTCAGTTTGTTATAACAAAGCG5

DNA sequence

TGTAAGAGCAATATAGTAATGTCCGGTTTGAGCAACTTTAAAATGTCCTCCTAAGCTTAAAGTGTTGCTTGGCTTTGAGGACCTAAACTGATGTTAATTG
CTATGAGTGAGCACGAGATAAATCGATTCAAAGTTCTAACGGATGTACAAGAAAAACGCTTACGACAAGTCGACGCTGCAGAAATTTTAAATGTCTCGAC
TCGACATGTCAGACGACTGTTGAACCAGTTAGCAACTTATGGTGCTAAAAGCTTGGCACATGCAGCCCGCGGTCGCCCAAGCAACCGACGCTATAATGAT
AACTTTCGAGCTGAAGTATTAGGGATTGTACGTGAACAATACTTCGATTTTTCACCCACGTTTGCGCTTGAAAAACTCTCTGAGCACCATAATCTGATTG
TTTCTAAAGAAACTCTCCGACAATGGATGATCGCTGACGGACTTTGGACTCCATATTCTAGGCGCAAGCCTAGAATTTATCAGCCTCGCTATCGCCGTGA
TTGTCTCGGTGAGCTCATCCAAATCGATGGTTCACACCATGATTGGTTTGAAGGCCGCAGCGATAAATGTTGCCTACTGGTCTTCATCGATGATGCAACG
GGCCGTTTGATGAACCTGCGATTTAGTGAGACCGAATCGGCGTTTGATTACATGTTGGCAACCCGCGAATACCTAAATGAGCATGGTAAGCCAGTCGCAT
TTTACAGCGATAAACACTCGATATTTCGGGTCAATCAAGAAAAACACAAACAAGTTGGCCAAACGCAATATGGCCGAGTATTGCATGATCTCGGTATTGA
GCTCATCTGTGCGAATAGCTCCCAAGCTAAAGGTCGTGTAGAACGAGCGAATCTGACACTGCAAAACCGCCTAGTGAAAGAAATGCGTTTACAACGCATC
AACACCATCGAAGAAGCCAATGCATGGCTTCCCTACTTCATCGATGACTTTAACCGTCGCTTTGCCAAACCCGCCAAGTTTCCTAAAGACATGCATCGTA
AAGTACGAGAATCCGAACGAGACCTGGAAGATATCTTCAGCTGGCAAGAAACACGCAAACTCTCAAAGTCACTCACATTTCAATACGACAAAGTTGTTTA
TCTCATTGAACCAACGGAAGAAAATAGTCGTTTAGCTCATGAACACGTCAAGGTTTTAGATTATCCAAACGGCGAGATTGCCATTGTTTATGACCATCGA
AAACTTAGTTTCAAAACCTTCGACAAGCTCGAACAAGTTCAACAAACACAAATCGTCGATAATAAGCGTCTTGGTCAGGTGTTGAAATTCGCCCAGAAGA
AACAAGAAGAATTCGAAGCCCAACAGCAACGAACACGAAGTAAAAAAGCGCCAAAACGACGAGCCCAACGACGGGCTTTACAAGAGAAACTTCGAGCCAT
CAACCCTGTCCTACATGAACCTGAAAAACATAAAGGATCAAGTCGGAAATCCTAACCTCTTCACATAGAGAACTTGAAATAAGGACATTTTAATCTGGGT
GGACAACAGGACATTTCAAACTTGAATTAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1365 bp454 aa911455+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLIAMSEHEINRFKVLTDVQEKRLRQVDAAEILNVSTRHVRRLLNQLATYGAKSLAHAARGRPSNRRYNDNFRAEVLGIVREQYFDFSPTFALEKLSEHH
NLIVSKETLRQWMIADGLWTPYSRRKPRIYQPRYRRDCLGELIQIDGSHHDWFEGRSDKCCLLVFIDDATGRLMNLRFSETESAFDYMLATREYLNEHGK
PVAFYSDKHSIFRVNQEKHKQVGQTQYGRVLHDLGIELICANSSQAKGRVERANLTLQNRLVKEMRLQRINTIEEANAWLPYFIDDFNRRFAKPAKFPKD
MHRKVRESERDLEDIFSWQETRKLSKSLTFQYDKVVYLIEPTEENSRLAHEHVKVLDYPNGEIAIVYDHRKLSFKTFDKLEQVQQTQIVDNKRLGQVLKF
AQKKQEEFEAQQQRTRSKKAPKRRAQRRALQEKLRAINPVLHEPEKHKGSSRKS

 

Blast result :
Comments
ISVbsp5 is 88% aa similar to ISVna1.
References
1] Patricia Siguier (2020) Direct submission.
2] Ruckert,C., Franco,A., Kalinowski,J. and Glaeser,S. (2019) Direct GenBank submission.