ISVgsp1

  • Family IS1202
  • Group IS1202
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
QRJY01000003 ND Vagococcus sp.
Vagococcus sp. AM17-17
DNA section
IS Length : 1589 bp

Ends


IR Length : 21/27

IRL : TATCATTCGAAAGTGATAATGTCCTAAGTAGGTCGAAAGACAAAATGTCC
IRR : TGTCAATCGAAAATAAAAATGTCCCAAAATGAGGGATCACATTAGCGCAA

Insertion site


Left flankDirect repeatRight flankDR Length
AAGACAGTTTATTTAAACATCGATAACATTTGATGTTTGAGAACACTTGTTCTTTTACTGAGA27

DNA sequence

TATCATTCGAAAGTGATAATGTCCTAAGTAGGTCGAAAGACAAAATGTCCCAAAATGATAGAATAACTTTATGAAAAGGATAAACCTAACAATGAATGAA
ACCAAAAAGTATCAAGTTATTAAAGCTGTTGCTGAAAATAAAAAACAAAAAAAGAGAACTAGTGTTGAACTTAATTTATCTATAAGACAAATTAACCGTT
TAGTGAAATCATACAGGGAAAATGGTAAATCAGCATTTGTCCATAAAAATCGAGGGAGAAAAAATAAGCACTCTGTGCCTGAAAAAATAAAACAACAAAT
AATCACTAGTTATCAATCGTTTAGTATTAAACCGAATATTAAGCATTTTACTGAAATACTAAAAAACGACCATCATATCTGCTATACAGATACTACAATT
AGAAGTATCCTGTACAAAGCAAAAATACTTTCACCAAAGGCTCAAAAAAAGACAAAAAGAAGACTCAAACAATTAATAAAGCAAGAAAGTCAACAAACCA
AACAATCAGAGAACCTATTGGTTCCAAGAGCTGAAGACTACCTAGAACTCCCTGAAAAGACCCATCCTAGTCGACCTAGAAAAAAATACAAAGGAGAATT
AATTCAATTAGATGCTAGTTCATATAATTGGTTTGGAAATCAAATAACTCATCTTCATTTAGCTATTGATGACGCATCAGGTAATATTGTTGGCGCTTAT
TTCGACCAACAGGAAACGCTCAATGGTTATTACCATGTTCTTCATCAAATTCTGACAAAACAAGGGATTCCTGTCACTTTTCTAACAGATAAACGAACCG
TCTTTGAGTACAACAGAAAATCAACGAAAGCTGTAGAAGAAGATACGTTCACGCAGTTTGGGTTTGCTTGTCATCAATTAGGTATTGACATAAAAACATC
CTCTATTCCTCAAGTGAAAGGTCGTGTAGAACGTTTAAATGGGACAGTGCAATCAAGATTGCCTGTTGATCTTGAGATAGCAAACATACATTCTATAGAG
GAGGCTAATCAATTTCTATCTGTATGGATTCGAAAGTTTAATCGACAATTTGGTCACAAAACTGCAGAAAGTGTTTATGAAACTTCTCCTACAACAGCTG
AAATTAATTTATTACTAGCTACTGTCTCTCATCGTATAGTCGATAATGGCCATCATATTAAGTATCAAAATAAATTTTATCTTCCAACGGAAGGTGGTAG
CGACAAATATTTTACAAGGAAAACGAAAGCATTAATTATAAAAGCTTTTAACGGAGAGATTTATGTTAATATAGCAGAAAAAATTTATCTTACTAGACGA
TTAAAAACCCACGAGACCTATTCAAAAGAGTTTGATGGGGTTTCTTCAGATATAAAAAAAGAAAGACGCAAGTACATTCCACCACAGTCACATCCGTGGA
AACTTGAGTCTTTCAAAAGGTATCTTCAAAGTATTGACCGTACTATCGAAGAATATGAGGCTGAAAAAACAGCCTGAAACAAAAAGTACCCTATTTTACC
AATAATGGTCACATTAGTGCAAATTTTACGCAGTAAAGATTGCGCTAATGTGATCCCTCATTTTGGGACATTTTTATTTTCGATTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1386 bp461 aa921477+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNETKKYQVIKAVAENKKQKKRTSVELNLSIRQINRLVKSYRENGKSAFVHKNRGRKNKHSVPEKIKQQIITSYQSFSIKPNIKHFTEILKNDHHICYTD
TTIRSILYKAKILSPKAQKKTKRRLKQLIKQESQQTKQSENLLVPRAEDYLELPEKTHPSRPRKKYKGELIQLDASSYNWFGNQITHLHLAIDDASGNIV
GAYFDQQETLNGYYHVLHQILTKQGIPVTFLTDKRTVFEYNRKSTKAVEEDTFTQFGFACHQLGIDIKTSSIPQVKGRVERLNGTVQSRLPVDLEIANIH
SIEEANQFLSVWIRKFNRQFGHKTAESVYETSPTTAEINLLLATVSHRIVDNGHHIKYQNKFYLPTEGGSDKYFTRKTKALIIKAFNGEIYVNIAEKIYL
TRRLKTHETYSKEFDGVSSDIKKERRKYIPPQSHPWKLESFKRYLQSIDRTIEEYEAEKTA

 

Blast result :
Comments
ISVgsp1 is 76% aa similar to ISSeq2.
References
1] Patricia Siguier (2020) Direct submission.
2] Zou,Y., Xue,W. and Luo,G. (2018) Direct GenBank submission.