ISVna1

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JMCH01000071 ND Vibrio navarrensis
Vibrio navarrensis 2232
DNA section
IS Length : 1990 bp

Ends


IR Length : 23/36

IRL : TGTAGGTGCAATTTAGTAATGTCCGGTTTGAGCAATTTTAAAATGTCCTC
IRR : TGTCAATCCCAGTTTAAAATGTCCTGTCTTCAGCAAAGTAGAAATGTCCT

Insertion site


Left flankDirect repeatRight flankDR Length
ATAATACGCACTGAGATA5

DNA sequence

TGTAGGTGCAATTTAGTAATGTCCGGTTTGAGCAATTTTAAAATGTCCTCTTATGCTTAATGAACACACTGAGCTTTGAGGATCTTAACCGATGCTAATT
CCAATGAGTGACCGAGACATTAATCGTTTTAAAGTGCTGCAAGATGTTCGCGAACGCCGACTTCGTCAAGTTGACGCCGCCGACATACTTAATATAAGCA
CTCGACAAGTTCGACGTTTATTGAGTCAGCTAAACCAACATGGCGCATCTTCTTTGGCACATGGTGCACGTGGTCGTCCGAGTAACCGACGTTATCCTGA
TGCTTTTCGGGCTGAGGTTCTGAACATCATACGCGCTCAATATGCTGACTTTTCGCCAACGTTTGCTTGTGAGAAGCTTACCGAGCAACACAACCTGCTC
CTGTCTGTCGAAACATTACGCCAGTGGATGATCGCCGATGGTCTCTGGGTCCCACACTCACAACGCCAGCCTCGTATTTACCAGCCTCGTTATCGTCGTG
ACTGCCTAGGCGAACTGGTTCAGATTGATGGCTCACACCACGACTGGTTTGAAGGACGCAGCTCTAAGTGCTGTCTCTTGGTCTACATCGATGATGCGAC
CGGACGTTTGATGAACCTACGCTTCAGTGATACCGAATCTGCCTTTGACTATATGGTGGCCACACGGGAATATCTGGATCAACATGGCAAGCCTGTGGCT
TTTTACAGCGATAAACACTCGATATTTCGTGTCAACCAAGAGCATCTCAAAAAAGTGGGATTAACCCAATTTGGTCGTATACTTGATGAACTTGGCATTG
AACTGATTTGTGCGAACAGCTCTCAAGCCAAAGGACGTGTTGAGCGAGCAAACAAGACGTTACAAGACCGACTAATCAAAGAGATGCGTCTACAAGGCAT
TAATACTATAGAAGAAGCGAACGCATGGCTGCCCTACTTTATCGAGGATTTTAATCACCGCTTTGCGAAGCCTGCCAACTACCCTAAAGATCTCCACCGT
CCAGTTCGCGAAGATCAAGATGAGTTGGATGACATTTTTGCTTGGCAGACCACGCGTAAACTCTCGAAGTCGTTGACATTCCAATATGACAAAGTACTTT
ATCTAATTGAAGAAACAGAGAAAAATAGCCGTCTTGTCAATGAAGTGGTCAAAATACTCGACTATCCAGATGGTCGAATTGCCGTCCAGTATGGCGAGAG
AAAGTTAAGTTTCAGAACCTTCGATAAGCTGGCTAAAGTGGATCAAACTCAAGTCGTCGACAACAAAAGATTGGGTAAAGTCCTTCAATTTGCCCAAGAG
AAGCAAGAAGAATTTGATAAAGCCCAGCTTAGGGAAAGAAGTCAAAACGCGCCTAAAAGAACGGCTCAGAAGCGCGCTATGTCTCAGCTAAGGGCTCTGA
ATCCTGTTTTAGCTGAGCCGGATAGTTTTAAGTCAAGCCACAGCAAAAACGGTTAAGAACCTACTTAGATAAACGACACTCAGAGCTAATAGTGTAGTGA
ATTGCGTCTTGTTCTGACTTTTCATCACTGATGCCCTGCTTCTTAACCATGTCTGTCCAATACTCAACACAAGCGTCAAAGTCAGTGCGTTGCTCGCATG
CAGCAAGAGTGAAGCTCAATGCAATAATCGTATGTCGAAACATTATTTGTGGTAAAACCAGCCCAGATTGTTCTCTGGGAAATAACTATGAGTGAGCTCT
ATATGGTCATGGCTGTCATTCAGTAGTTTGAGTATTTCATTCGCTTCTGACAGCGTTAAACTACGGTTAACCCCTTCAGTTTCTTGACACCAATCTACAA
ATTCTTGCGTGTTGAAAGGAATACGATCTCCTTCTCTATGTTCAAGATGAGACTGAATAACTGACATTGCATCGAAAGACATAATTTACCCCGTATAACT
TTTATGAATTTCAATGCATAAGTATAGTTCAGTTAACAACAGGACATTTCTACTTTGCTGAAGACAGGACATTTTAAACTGGGATTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1365 bp455 aa921456+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLIPMSDRDINRFKVLQDVRERRLRQVDAADILNISTRQVRRLLSQLNQHGASSLAHGARGRPSNRRYPDAFRAEVLNIIRAQYADFSPTFACEKLTEQH
NLLLSVETLRQWMIADGLWVPHSQRQPRIYQPRYRRDCLGELVQIDGSHHDWFEGRSSKCCLLVYIDDATGRLMNLRFSDTESAFDYMVATREYLDQHGK
PVAFYSDKHSIFRVNQEHLKKVGLTQFGRILDELGIELICANSSQAKGRVERANKTLQDRLIKEMRLQGINTIEEANAWLPYFIEDFNHRFAKPANYPKD
LHRPVREDQDELDDIFAWQTTRKLSKSLTFQYDKVLYLIEETEKNSRLVNEVVKILDYPDGRIAVQYGERKLSFRTFDKLAKVDQTQVVDNKRLGKVLQF
AQEKQEEFDKAQLRERSQNAPKRTAQKRAMSQLRALNPVLAEPDSFKSSHSKNG

 

Blast result :
Comments
ISVna1 is 79% aa similar to ISKpn63.
References
1] Patricia Siguier (2020) Direct submission.
2] Gladney,L.M., Katz,L.S., Marino-Ramirez,L. and Jordan,I.K. (2014) Direct GenBank submission.