ISVpa6

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KJ468740 ND Vibrio parahaemolyticus
Vibrio parahaemolyticus A3
DNA section
IS Length : 1523 bp

Ends


IR Length : 41/54

IRL : TGTGAGCCCCCGATAGTAATGTCCGGTTTGACCCATTTAGAAATGTCCTC
IRR : TGTCAATCCCCGATAAAAATGTCCTCTTTTCTCCCCATTAGAAATGTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
ATGGCGTACTGTAATGCTATTTTTGGTGAATTC5

DNA sequence

TGTGAGCCCCCGATAGTAATGTCCGGTTTGACCCATTTAGAAATGTCCTCTTTTATGGCTTATCGCCTTAAGAGGATTTACCGGAATGCTGATAACCATG
AGCACCAAAGAACTAGAAAGAATCAAAATATTACAAGACGTGATCGATCGTAGAATGCGTCAATGTGATGCTGCCAAACGATTAAATCTCTCCCCTCGAC
AAGTACGTCGATTAATCAAACAGTTAGAGCAAAATGGACCATCGTCGCTAGCTCATAAAGCTAGAGGCAAGCCTAGCAACCGAGGTCACTCACCAGAATA
CCGCCTAACAGTCTTACAAACGATAAGAGAGCACTATCCTGACTTCCCACCTACCTTCGCTAGAGAGAAGCTACTGGAGTGTCACAACCTCCCTGTAGGA
TTAGAGACACTGCGCAATTGGATGATTGCAGATTTAATTTGGAAACCGAGATCCCAACGTAAACCGAAGGTTTACCAACCTAGACATCGACGTGACTGTT
TAGGTGAGCTGATTCAAATTGACGGCTCCCATCATGATTGGTTTGAAGGTCGTCGCCCAAAATGTTGCTTGCTCGTTTTTATCGACGATGCCACCGGACG
TCTGATGAATCTAAGATTTAGCGAAACTGAATCCGTCATTGATTACATGGTTACCACTCGTGAATATGTTGAAACTCACGGAAAACCACAGGCATTCTAC
AGTGATCGACACTCAATATTTCACTCCAGCACAAAAAAAGGTATTGAAGCTAAAAACTCGACTCAATTTGGACGAGCGTTAAAAGAGCTCGGAATTGAGC
TTATTTGTGCCAATAGTTCACAGGCTAAAGGGCGAGTCGAACGAGCGAATTTAACGCTCCAGAATCGCCTAGTGAAAGAAATGCGACTAAAAAAATTAGA
CACGATAGCTGATGCTAACTTATGGCTTCCTGAGTTCATGGAGGACTTCAACCGACGTTTTGCTAAACCGGCAAACTACCCTAAAGACATGCATCGAACA
TTAAGAGAAGAATCCCATGAACTGTATGATATTTTCTCTTGGCAATCAGTTCGTAAACTATCTAACTCCTTGACGTTCCAATACAACCAAGTTGTTTACC
TAATTGAAAACTCAGATGAAAACACAAGACTAGTTCATGAGAACGTACTCATTTTAGAACACCTGGATGGTCATATTAGTGTGCGTTATGGCAATAGGCC
ATTGAAATTTAAGATCTTCGACAAACTAGAAAAAGTATCACAAGGTCAGATTGTTGATAACAAGAGACTTGGTCAAGTATTGCTATTTGCCAAAGAGAAG
CAAGATGAATTTGAAGCAAAGAATAAGCGCAAGAGGAACTCAAAAGCGGTTAGTATTATAGGTCAGAGACAAGCAATGAATGAGCAGCTAAGAGCATTAA
ATCCAGTCCTTCTTGAACCAGACCAATTTACTGCCAGCCACTCACGTTAACTGAATTTCTTTTCTCCCCAAAGCGGACATTTCTAATGGGGAGAAAAGAG
GACATTTTTATCGGGGATTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1365 bp454 aa861450+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLITMSTKELERIKILQDVIDRRMRQCDAAKRLNLSPRQVRRLIKQLEQNGPSSLAHKARGKPSNRGHSPEYRLTVLQTIREHYPDFPPTFAREKLLECH
NLPVGLETLRNWMIADLIWKPRSQRKPKVYQPRHRRDCLGELIQIDGSHHDWFEGRRPKCCLLVFIDDATGRLMNLRFSETESVIDYMVTTREYVETHGK
PQAFYSDRHSIFHSSTKKGIEAKNSTQFGRALKELGIELICANSSQAKGRVERANLTLQNRLVKEMRLKKLDTIADANLWLPEFMEDFNRRFAKPANYPK
DMHRTLREESHELYDIFSWQSVRKLSNSLTFQYNQVVYLIENSDENTRLVHENVLILEHLDGHISVRYGNRPLKFKIFDKLEKVSQGQIVDNKRLGQVLL
FAKEKQDEFEAKNKRKRNSKAVSIIGQRQAMNEQLRALNPVLLEPDQFTASHSR

 

Blast result :
Comments
ISVpa6 is 79% aa similar to ISVna1.
References
1] Patricia Siguier (2020) Direct submission.
2] Tang,K.F.J. and Lightner,D.V. (2014) Direct GenBank submission.