ISVse1
- Family IS1202
- Group IS1202
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AHAF01000020 | ND | Veillonella seminalis | Veillonella seminalis ACS-216-V-Col6b |
DNA section
IS Length : 1589 bp
Ends
IR Length : 19/24
IRL : TGTAAAACACATATGATATTGTCATAGTATAAACGTAAATGATTTTGTCA
IRR : TGTCAAGCACAAATGAATTTGTCACTCAAAATTTAAAAATATAAGCGTAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACAAATATTAATCATA | CGATATATTTAAATATTCC | 0 |
DNA sequence
TGTAAAACACATATGATATTGTCATAGTATAAACGTAAATGATTTTGTCACACATATTGTATACTCTATATTGGAGGTACAATATGAGAAAGGTAATTTT
AACATTGAACGAACAAGACACATATGAAGTAATTAAGAATCTAGTAGACCACGCCGGTAATAAGAAACGAGCTGCTCTAAGACTGGGATGTAGTATGAGA
ACAATCTACCGTCACATCAAAGGATACAAAGAGCATGGTAAGGCTTATTTCAGACATGGCAACCATCAACATAAACCAAGTACTACGGTTTCACGCGCTA
TTAGACGGCAAATTGTTGATATTTACAACACTTTGTACTACGATGCCAATTTTGTCCATTTCCACGAATTATTAACACACTACCATCCGGAGGTCCCTAC
ACCATCTATAGCCACATTGCGTAATATATTCAAAGAGTATGACATACTCTCTCCTAAGGCTCATGCTGCAACTAGACGTGCTCTCAGAAAAAAGGATGCC
TTGGCCAACAAGCCTGCTAATACGTCGGAACCATTAATTAGGCTAGAAGAGGCTGTTGAGAGTAAACGACCACATCCTAGACGATCCGCCTCGCGATACG
CCGGCGAAAAAATCTATATAGACGCATCACCTCATCTTTGGTTCGGTACTACAAAAACATCACTACACGCAGCCATCGATGACAGTACGGGCATAGTTAC
GGGCCTGTATTTTGCTGAACAAGAGACGCTAAAAGGGTATTATGAACTAACGGCCCAAATGTTAAGAAATTACGGTATTCCGGCTAATATTCAAACGGAT
GGGCGCACTGTTTTTGAATACAAAAAAGCCGGTGTACGCGCTCCTGAAAGCGATACACCGACGCAATATGCATACGCCTGTCAACAACTTGGCATACACT
TGCACCCTGGCTTTTCTGCTGAAGCGCAAGGAAAGATTGAACGACTCTTCCAAACACTTCAATCTCGTCTTCCTGTTGAGTTTAGACGATTAGGGATAGA
TTCTATTGAGGCTGCCAATGAATATGTCACCACAACGTATTTAGCGCAGCTAAACCAAAAGAAACTACCTTACCTCAACAATACCATGTCTGTCTTCGAA
AGGCAACTCTCTGAGGAAGATATTAACCTTACATTAGCAGTATTAAGCTCTAGAATTGTGGATAAAGGGCATTGCATTTCATACTATAACCAATATTACC
AATTTATTAAACCGGATGGTACGCAGGCATATTTAAAGAAAGGTAACAAAGTCCTTGTTATTAAAGCTTTAGATGGAACGTTATTCGCCTCTTGCAAGGA
ATCCTTGTTTAAACTACAGCCTGTGCCGGCTAGAAAAGCGTATTCCCTAAAATTTGATCAGCCTACACATGCTAAACTGGTTCACAAACCAAGGAAGGTT
TATATTCCTTCTATGCGTCATCCTTGGAAGTCTAATAAATTTGATGACTTTGAGGACTACCGGGCAAAATTTGTGTACAACTTTTCTGATGTTTGCTACA
CACAACATGCTTACAAAAATGAAATTTAACAGCGTAAAATTACGCTTATATTTTTAAATTTTGAGTGACAAATTCATTTGTGCTTGACA
AACATTGAACGAACAAGACACATATGAAGTAATTAAGAATCTAGTAGACCACGCCGGTAATAAGAAACGAGCTGCTCTAAGACTGGGATGTAGTATGAGA
ACAATCTACCGTCACATCAAAGGATACAAAGAGCATGGTAAGGCTTATTTCAGACATGGCAACCATCAACATAAACCAAGTACTACGGTTTCACGCGCTA
TTAGACGGCAAATTGTTGATATTTACAACACTTTGTACTACGATGCCAATTTTGTCCATTTCCACGAATTATTAACACACTACCATCCGGAGGTCCCTAC
ACCATCTATAGCCACATTGCGTAATATATTCAAAGAGTATGACATACTCTCTCCTAAGGCTCATGCTGCAACTAGACGTGCTCTCAGAAAAAAGGATGCC
TTGGCCAACAAGCCTGCTAATACGTCGGAACCATTAATTAGGCTAGAAGAGGCTGTTGAGAGTAAACGACCACATCCTAGACGATCCGCCTCGCGATACG
CCGGCGAAAAAATCTATATAGACGCATCACCTCATCTTTGGTTCGGTACTACAAAAACATCACTACACGCAGCCATCGATGACAGTACGGGCATAGTTAC
GGGCCTGTATTTTGCTGAACAAGAGACGCTAAAAGGGTATTATGAACTAACGGCCCAAATGTTAAGAAATTACGGTATTCCGGCTAATATTCAAACGGAT
GGGCGCACTGTTTTTGAATACAAAAAAGCCGGTGTACGCGCTCCTGAAAGCGATACACCGACGCAATATGCATACGCCTGTCAACAACTTGGCATACACT
TGCACCCTGGCTTTTCTGCTGAAGCGCAAGGAAAGATTGAACGACTCTTCCAAACACTTCAATCTCGTCTTCCTGTTGAGTTTAGACGATTAGGGATAGA
TTCTATTGAGGCTGCCAATGAATATGTCACCACAACGTATTTAGCGCAGCTAAACCAAAAGAAACTACCTTACCTCAACAATACCATGTCTGTCTTCGAA
AGGCAACTCTCTGAGGAAGATATTAACCTTACATTAGCAGTATTAAGCTCTAGAATTGTGGATAAAGGGCATTGCATTTCATACTATAACCAATATTACC
AATTTATTAAACCGGATGGTACGCAGGCATATTTAAAGAAAGGTAACAAAGTCCTTGTTATTAAAGCTTTAGATGGAACGTTATTCGCCTCTTGCAAGGA
ATCCTTGTTTAAACTACAGCCTGTGCCGGCTAGAAAAGCGTATTCCCTAAAATTTGATCAGCCTACACATGCTAAACTGGTTCACAAACCAAGGAAGGTT
TATATTCCTTCTATGCGTCATCCTTGGAAGTCTAATAAATTTGATGACTTTGAGGACTACCGGGCAAAATTTGTGTACAACTTTTCTGATGTTTGCTACA
CACAACATGCTTACAAAAATGAAATTTAACAGCGTAAAATTACGCTTATATTTTTAAATTTTGAGTGACAAATTCATTTGTGCTTGACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1446 bp | 481 aa | 84 | 1529 | + | No |
Chemistry : DDE
ORF sequence :
MRKVILTLNEQDTYEVIKNLVDHAGNKKRAALRLGCSMRTIYRHIKGYKEHGKAYFRHGNHQHKPSTTVSRAIRRQIVDIYNTLYYDANFVHFHELLTHY
HPEVPTPSIATLRNIFKEYDILSPKAHAATRRALRKKDALANKPANTSEPLIRLEEAVESKRPHPRRSASRYAGEKIYIDASPHLWFGTTKTSLHAAIDD
STGIVTGLYFAEQETLKGYYELTAQMLRNYGIPANIQTDGRTVFEYKKAGVRAPESDTPTQYAYACQQLGIHLHPGFSAEAQGKIERLFQTLQSRLPVEF
RRLGIDSIEAANEYVTTTYLAQLNQKKLPYLNNTMSVFERQLSEEDINLTLAVLSSRIVDKGHCISYYNQYYQFIKPDGTQAYLKKGNKVLVIKALDGTL
FASCKESLFKLQPVPARKAYSLKFDQPTHAKLVHKPRKVYIPSMRHPWKSNKFDDFEDYRAKFVYNFSDVCYTQHAYKNEI
HPEVPTPSIATLRNIFKEYDILSPKAHAATRRALRKKDALANKPANTSEPLIRLEEAVESKRPHPRRSASRYAGEKIYIDASPHLWFGTTKTSLHAAIDD
STGIVTGLYFAEQETLKGYYELTAQMLRNYGIPANIQTDGRTVFEYKKAGVRAPESDTPTQYAYACQQLGIHLHPGFSAEAQGKIERLFQTLQSRLPVEF
RRLGIDSIEAANEYVTTTYLAQLNQKKLPYLNNTMSVFERQLSEEDINLTLAVLSSRIVDKGHCISYYNQYYQFIKPDGTQAYLKKGNKVLVIKALDGTL
FASCKESLFKLQPVPARKAYSLKFDQPTHAKLVHKPRKVYIPSMRHPWKSNKFDDFEDYRAKFVYNFSDVCYTQHAYKNEI
Blast result :
Comments
ISVse1 is 63% aa similar to ISNba1.
References
1] Patricia Siguier (2020) Direct submission.
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Saerens,B., Vaneechoutte,M., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2012) Direct GenBank submission.
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Saerens,B., Vaneechoutte,M., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2012) Direct GenBank submission.