ISAzs38

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FZOI01000017 ND Azospirillum sp.
Azospirillum sp. RU38E
DNA section
IS Length : 1497 bp

Ends


IR Length : 19/25

IRL : TGTAGGCGCAAAGTTAAAATGTCAGTCCTGAGCAAGATAGAAATGTCAGT
IRR : TGTCAGTGCCAGTTAGAAATGTCATCGGTTTGCGCCGGATAGAAATGTCA

Insertion site


Left flankDirect repeatRight flankDR Length
TTATTGATAAATTTGAATGGCTGTAGGCGGGTGGATT0

DNA sequence

TGTAGGCGCAAAGTTAAAATGTCAGTCCTGAGCAAGATAGAAATGTCAGTCTCTGGATCGGTTTTGGCCGGTTTTGGAGGCTGCCATGGGCTGGCTGATG
ATGAGCGATCGGGATGTCCGGCGTGTTGAGGTACTGGCAGAAATCGAGAGTGGTCAGCTTGGGGTTTCGGACGCCTCTGGGATATTGGGTTTGAGTGAGC
GTCAGGTATGGCGTCTTCTGGATCGGTATCGATGCGATGGCGGCGGTGGGATTGTCCATCGAGGCCGGGGCCGACCGTCGAACCATCGATTGGTGGCGGG
TTTACGCGCGCTGGCGCTGGAACTGGTTCGTCTGCATTACCATGATTTTGGGCCAACATTGGCAGCGGAGAAGCTTGCCGAACGGCATGGTCTTACGGTG
TCGCGGGAGACGCTGCGGCACTGGATGGCGGAGGCCGGTCTCTGGCGGACAAAGGCCCAGCGGCGTCAATTTCACCGCCCTCGCCTTCGGCGGCAATGCC
TGGGTGAGTTGGTACAGATTGATGGGAGCGAGCATCGTTGGTTTGAGGATCGGGGGCCGCCCTGCACGCTGCTGGTGTTTGTGGATGATGCGACCAGCCG
GCTGATGCATCTGAAATTTGTGCCGTCGGAGAGCACGCTGGCCTATATGCAGGCGACGCGGGATTACATCGCTGCCTATGGGAGGCCGGTGGCCTTTTAC
AGCGATCGGCATGGCATTTTCCGGGTTAACCGACCGGGCGAAAGTAAACGCAGCGACGGTCTGACCCAGTTCGGGCGAGCCTTGCAGGACCTGGAGATTA
CCATCCTCTGCGCGCATTCCCCGCAGGCCAAGGGTCGGGTCGAGCGGGCGCATCTGACATTGCAGGATCGGCTGGTGAAGGAATTGCGTCTGGCTGGGAT
TTCCACGATGGAGGCGGCCAACCGGCTCCTGCCGGATTTTGTCCGGGACTATAACGAACGCTTTGCCAAGCCGCCCCATCAGCCGGAGAACCTGCACCGT
CCGCTGGCCCCCTATCAGGATCTGGACGAGGTTCTGGCTTGGCGGGAGGAGCGCACGGTTACCGACAATCTGACCCTGCACTACAACCGGGTGATGCTGC
TTTTGGAGCCGAGCCGAATGGCGCGGGCGGCCCGGCACCGGCGGGTGACGGTATATGATTATCCCGACGGGCGCCTGCTGGTCCGCTGGAAGGGTGTTGA
TTTGCCGTTCCGGGCCTTCGACAAGCTGCAACGGGTGCCCCAGGGCGAGATTGTCGATAACAAGCGGCTGTCGGCAGCGCTGGCGTGGGCCCAGGAGGAG
CAGGCCAAGGCCTCTCCCCGTCAGCGCCGCACACATAGTCCAACCCGTCGTGCACAGGGGCCGGCTCCCTTCACCACGTGAACCGCTTGCGGGGGCTGCG
CTGCGCGCGGCGGAAGGCTCCGCGCAGCCCCCGCAAGCTCACAAGGGTGACATTTCTATCCGGCGCAAACCGATGACATTTCTAACTGGCACTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1296 bp431 aa861381+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGWLMMSDRDVRRVEVLAEIESGQLGVSDASGILGLSERQVWRLLDRYRCDGGGGIVHRGRGRPSNHRLVAGLRALALELVRLHYHDFGPTLAAEKLAER
HGLTVSRETLRHWMAEAGLWRTKAQRRQFHRPRLRRQCLGELVQIDGSEHRWFEDRGPPCTLLVFVDDATSRLMHLKFVPSESTLAYMQATRDYIAAYGR
PVAFYSDRHGIFRVNRPGESKRSDGLTQFGRALQDLEITILCAHSPQAKGRVERAHLTLQDRLVKELRLAGISTMEAANRLLPDFVRDYNERFAKPPHQP
ENLHRPLAPYQDLDEVLAWREERTVTDNLTLHYNRVMLLLEPSRMARAARHRRVTVYDYPDGRLLVRWKGVDLPFRAFDKLQRVPQGEIVDNKRLSAALA
WAQEEQAKASPRQRRTHSPTRRAQGPAPFTT

 

Blast result :
Comments
ISAzs38 is 70% aa similar to ISRel26.
References
1] Patricia Siguier (2020) Direct submission.
2] Varghese,N. and Submissions,S. (2017) Direct GenBank submission.