ISAba1
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY758396 | ND | Acinetobacter baumannii | Acinetobacter baumannii |
DNA section
IS Length : 1180 bp
Ends
IR Length : 14/15
IRL : CTCTGTACACGATAAAAATAGATAACTCATTGAAATAATGTCATAATAAT
IRR : CTCTGTACACGACAAATTTCACAGAACCCTTATCCTATCAGGGTTCTGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATAATTTAT | GAGCTAATC | ATGCGATTTA | 9 |
DNA sequence
CTCTGTACACGATAAAAATAGATAACTCATTGAAATAATGTCATAATAATTGTTTTCTAACGACGAATACTATGACACATCTCAATGAGTTATATCTTAT
CTTAAACAAATATCTAAAATGGAACAAGTCACATTTAAAGTGCTTTGCGCTCATCATGCTTGTGATTATTTTAAAGCAAACATGTAATCTTTCTTCTGCA
TCTAAAGCCTTGCCCATCAAGTGCTTACCACAATCATTTTATCGACGTATGCAGCGCTTCTTTGCAGGTCAGTATTTTGATTATCGTCAAATTTCTCAGT
TGATTTTCAATATGTTTTCATTCGACCAAGTGCAACTGACTTTAGATAGAACCAATTGGAAATGGGGAAAACGAAATATTAATATCCTGATGCTCGCAAT
CGTTTATCGTGGAATAGCGATACCTATCCTTTGGACATTGCTTAATAAACGTGGAAATTCAGATACGAAAGAGCGTATTGCTTTGATTCAACGCTTTATA
GCCATTTTTGGTAAAGACCGTATTGTGAATGTGTTCGCAGACAGAGAGTTTATCGGTGAGCAGTGGTTTACATGGTTAATTGAACAAGACATCAACTTCT
GCATTCGTGTTAAAAAAACTTCATTGTCACCAATCATTTAGGAAAGAATCATAAAATTAGTGATTTATTTCGCCATCTTAAAGTTGGTCAAATTGAATGT
CGTAAACGACGGATTTTGGTTGGTCGGGTGAAACTATATATAAGTGCACTACAGTTAGAAAATGGAGAGCTTTTACTCGTCGTTTCTCCTCAGTTTAATG
CCAATGCTATTCAGGATTATGCATTACGCTGGGAAATTGAAACCTTATTCAGTTGTCTCAAAGGACGCGGGTTTAATCTTGAAAATACGCGCTTGACAGA
CCCTAGACGAGTGAAAAAATTGATTGCGGTGTTAGCTATAAGCTTCTGTTGGTGTTACTTAACGGGTGAATGGCAACATGATCAAAAAAAAGCGATAAAA
ATAAAGAAGCATGGACGACTCTCAATGAGTTTATTTCGCTATGGTTTAGACTATGTTCAAATGGCGATTCAGCGTTTAATTGGTTTTGGGAAAAAAGAAG
AGTTTAAGGAAATTTTGGCAATTTTAAGAAGGCAGAACCCTGATAGGATAAGGGTTCTGTGAAATTTGTCGTGTACAGAG
CTTAAACAAATATCTAAAATGGAACAAGTCACATTTAAAGTGCTTTGCGCTCATCATGCTTGTGATTATTTTAAAGCAAACATGTAATCTTTCTTCTGCA
TCTAAAGCCTTGCCCATCAAGTGCTTACCACAATCATTTTATCGACGTATGCAGCGCTTCTTTGCAGGTCAGTATTTTGATTATCGTCAAATTTCTCAGT
TGATTTTCAATATGTTTTCATTCGACCAAGTGCAACTGACTTTAGATAGAACCAATTGGAAATGGGGAAAACGAAATATTAATATCCTGATGCTCGCAAT
CGTTTATCGTGGAATAGCGATACCTATCCTTTGGACATTGCTTAATAAACGTGGAAATTCAGATACGAAAGAGCGTATTGCTTTGATTCAACGCTTTATA
GCCATTTTTGGTAAAGACCGTATTGTGAATGTGTTCGCAGACAGAGAGTTTATCGGTGAGCAGTGGTTTACATGGTTAATTGAACAAGACATCAACTTCT
GCATTCGTGTTAAAAAAACTTCATTGTCACCAATCATTTAGGAAAGAATCATAAAATTAGTGATTTATTTCGCCATCTTAAAGTTGGTCAAATTGAATGT
CGTAAACGACGGATTTTGGTTGGTCGGGTGAAACTATATATAAGTGCACTACAGTTAGAAAATGGAGAGCTTTTACTCGTCGTTTCTCCTCAGTTTAATG
CCAATGCTATTCAGGATTATGCATTACGCTGGGAAATTGAAACCTTATTCAGTTGTCTCAAAGGACGCGGGTTTAATCTTGAAAATACGCGCTTGACAGA
CCCTAGACGAGTGAAAAAATTGATTGCGGTGTTAGCTATAAGCTTCTGTTGGTGTTACTTAACGGGTGAATGGCAACATGATCAAAAAAAAGCGATAAAA
ATAAAGAAGCATGGACGACTCTCAATGAGTTTATTTCGCTATGGTTTAGACTATGTTCAAATGGCGATTCAGCGTTTAATTGGTTTTGGGAAAAAAGAAG
AGTTTAAGGAAATTTTGGCAATTTTAAGAAGGCAGAACCCTGATAGGATAAGGGTTCTGTGAAATTTGTCGTGTACAGAG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
570 bp | 189 aa | 72 | 641 | + | No |
Chemistry : DDE
ORF sequence :
MTHLNELYLILNKYLKWNKSHLKCFALIMLVIILKQTCNLSSASKALPIKCLPQSFYRRMQRFFAGQYFDYRQISQLIFNMFSFDQVQLTLDRTNWKWGK
RNINILMLAIVYRGIAIPILWTLLNKRGNSDTKERIALIQRFIAIFGKDRIVNVFADREFIGEQWFTWLIEQDINFCIRVKKTSLSPII
RNINILMLAIVYRGIAIPILWTLLNKRGNSDTKERIALIQRFIAIFGKDRIVNVFADREFIGEQWFTWLIEQDINFCIRVKKTSLSPII
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
537 bp | 178 aa | 626 | 1162 | + | No |
Chemistry : DDE
ORF sequence :
VTNHLGKNHKISDLFRHLKVGQIECRKRRILVGRVKLYISALQLENGELLLVVSPQFNANAIQDYALRWEIETLFSCLKGRGFNLENTRLTDPRRVKKLI
AVLAISFCWCYLTGEWQHDQKKAIKIKKHGRLSMSLFRYGLDYVQMAIQRLIGFGKKEEFKEILAILRRQNPDRIRVL
AVLAISFCWCYLTGEWQHDQKKAIKIKKHGRLSMSLFRYGLDYVQMAIQRLIGFGKKEEFKEILAILRRQNPDRIRVL
Blast result :
Comments
Putative frameshift site (AAAAAAA) located upstream of second ORF (position 612-618).
ISAba1 is 48% aa similar to ISDra1.
Additional accession number : EF120622, this sequence was submitted by Dr Haluk Vahaboglu ( Kocaeli University Tip Fakultesi, Tûrkiye).
ISAba1 is 48% aa similar to ISDra1.
Additional accession number : EF120622, this sequence was submitted by Dr Haluk Vahaboglu ( Kocaeli University Tip Fakultesi, Tûrkiye).
References
1] Laurent Poirel (2004) Direct submission
2] Heritier C, Poirel L, Nordmann P. (2006).Clin Microbiol Infect. 12:123-130.
3] Kasap,M., Torol,S., Gacar,G., Budak,F. and Vahaboglu,H. (2007) Direct submission GenBank and ISfinder.
2] Heritier C, Poirel L, Nordmann P. (2006).Clin Microbiol Infect. 12:123-130.
3] Kasap,M., Torol,S., Gacar,G., Budak,F. and Vahaboglu,H. (2007) Direct submission GenBank and ISfinder.