MAJOR FEATURES OF PROKARYOTE IS FAMILIES


Families Sub-groups Typical size-range a DR b Ends c IRs d Nb ORF Frameshift Chemistry e Comments Mechanism
                     
IS1 - 740-1180 8-9 GGnnnTG Y 2 ORFAB DDE copy-and-paste
co-integrate
1 ORF 800-1200 0-9 1  
  ISMhu11 900-4600 0-10 Y 2 ORFAB  
IS1595 ISPna2 1000-1150 8 GGCnnTG Y 1   DDNK   copy-and-paste ?
+pass 1500-2600 8  
ISH4 1000 8 CGCTCTT 1   DDNK
IS1016 700-745 7-9 GGGgctg 1   DDEK
IS1595 900-1100 8 CcTGATT 1   DDNK + ER4R7
ISSod11 1000-1100 8 nnnGcnTATC 1   DDHK + ER4R7
ISNwi1 1080-1200 8 ggnnatTAT 1   DDEK + ER4
+pass 1750-4750 8 1  
  ISNha5 3450-7900 8 CGGnnTT 1   DDER/K  
                     
IS3 IS150 1200-1600 3-4 TG Y 2 ORFAB DDE ORFB coordinates defined between two STOP codons since there are no inherent initiation signals and the orf is not translated alone. copy-paste
IS407 1100-1400 4 TG
IS51 1000-1400 3-4 TG
IS3 1150-1750 3-4 TGa/g
  IS2 1300-1400 5 TG
IS481 - 950-1300 4-15 TGT Y 1       copy-paste ?
                     
IS4 IS10 1200-1350 9 CT Y 1   DDE Hairpin intermediate cut-and paste 
IS50 1350-1550 8-9 C Hairpin intermediate
ISPepr1 1500-1600 7-8 -T-AA
IS4 1400-1600 10-13 -AAT
IS4Sa 1150-1750 8-10 CA
ISH8 1400-1800 10 CAT
  IS231 1450-5400 10-12 CAT 1 or + *   * Passenger genes
IS701 - 1400-1550 4   Y 1   DDE    
ISH3 - 1225-1500 4-5 C-GT Y 1   DDE    
IS1634 - 1500-2000 5-6 C Y 1   DDE    
                     
IS5 IS903 950-1150 9 GG Y 1   DDE  
ISL2 850-1200 2-3 1  
ISH1 900-1150 8 -GC 1  
IS5 1000-1500 4 Ga/g 1  
IS1031 850-1050 3 GAa/g 1  
  IS427 800-1000 2-4 Ga/g 2 ORFAB  
IS1182   1330-1950 0-60   Y 1   DDE    
                     
IS6 - 700-900 8 GG Y 1   DDE   co-integrate
IS21 - 1750-2600 4-8 TG Y 2 *   DDE * istB : helper of transposition  
IS30 - 1000-1700 2-3   Y 1   DDE   copy and paste
IS66 - 2000-3000 8-9 GTAA Y 3 *   DDE * * TnpC has the DDE domain  
  ISBst12 1350-1900 8-9 GTAA Y 1   DDE  
IS91 - 1500-2000 0   N 1   Y2 Target site GAAC ( ) CAAG rolling circle
IS110 - 1200-1550 0   N 1   DEDD    
  IS1111   Y * * IRs not at the termini of the IS
IS200/IS605 f IS200 600-750 0 N 1 *   Y1  * TnpA  peel and paste
- 1300-2000 2 *   Y1 ** * TnpA + TnpB ;  ** Y1 on TnpA
  IS1341 1200-1500   1 *     * TnpB
IS607 - 1700-2500 0   N 2 *   Serine ** * TnpA + TnpB ;  **  on TnpA
IS256 - 1200-1500 8-9 Ga/g Y 1   DDE   copy-paste
IS630 - 1000-1400 2 *   Y 1 or 2 ORFAB DDE * Target site : often NTAN with duplication of the TA cut-and paste 
IS982 - 1000 3-9 AC Y 1   DDE    
IS1380 - 1550-2000 4-5 CC Y 1   DDE    
ISAs1 - 1200-1500 8-10 CAGGG Y 1        
ISL3 - 1300-2300 8 GG Y 1        
Tn3 - >3000 0 GGGG Y >1   DDE   co-integrate
ISAzo13 - 1250-2200 0-4 Ga/g Y 1        

a Size range in base pairs (bp) represents the typical range of each group.

b Direct target repeats in base pairs; ND, not determined; less frequently observed lengths are included in brackets.

c Conserved terminal based pairs. Capital letters(and capital letters within parentheses) refer to mostly (and often) conserved bases. Lowercase letters separated by slashes indicate alternative conservation at that position.

d Presence (Y) or absence (N) of terminal inverted repeats.

e DDE represents the common acidic triad presumed to be part of the active site of the transposase.

f In the IS200/IS605 family, when the accessory gene TnpB is present, it give the sens of the IS.